An Atomistic View on the Mechanism of Diatom Peptide-Guided Biomimetic Silica Formation.
NMR spectroscopy
diatom peptides
fractal cluster formalism
molecular dynamics simulations
peptide‐guided mineralization
silica templating
Journal
Advanced science (Weinheim, Baden-Wurttemberg, Germany)
ISSN: 2198-3844
Titre abrégé: Adv Sci (Weinh)
Pays: Germany
ID NLM: 101664569
Informations de publication
Date de publication:
14 Jun 2024
14 Jun 2024
Historique:
revised:
23
05
2024
received:
02
02
2024
medline:
14
6
2024
pubmed:
14
6
2024
entrez:
14
6
2024
Statut:
aheadofprint
Résumé
Deciphering nature's remarkable way of encoding functions in its biominerals holds the potential to enable the rational development of nature-inspired materials with tailored properties. However, the complex processes that convert solution-state precursors into solid biomaterials remain largely unknown. In this study, an unconventional approach is presented to characterize these precursors for the diatom-derived peptides R5 and synthetic Silaffin-1A
Identifiants
pubmed: 38874418
doi: 10.1002/advs.202401239
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e2401239Subventions
Organisme : European Research Council
Pays : International
Organisme : HORIZON EUROPE European Research Council
ID : 801936
Organisme : Austrian Science Fund
ID : P33338-N
Organisme : Austrian Science Fund
ID : I5771-N
Informations de copyright
© 2024 The Author(s). Advanced Science published by Wiley‐VCH GmbH.
Références
Y. Wang, S. Von Euw, F. M. Fernandes, S. Cassaignon, M. Selmane, G. Laurent, G. Pehau‐Arnaudet, C. Coelho, L. Bonhomme‐Coury, M. M. Giraud‐Guille, F. Babonneau, T. Azais, N. Nassif, Nat. Mater. 2013, 12, 1144.
E. L. Burger, V. Patel, Orthopedics 2007, 30, 939.
M. Duer, A. Veis, Nat. Mater. 2013, 12, 1081.
J. Scheck, B. Wu, M. Drechsler, R. Rosenberg, A. E. Van Driessche, T. M. Stawski, D. Gebauer, J. Phys. Chem. Lett. 2016, 7, 3123.
K. Maeda, K. B. Henbest, F. Cintolesi, I. Kuprov, C. T. Rodgers, P. A. Liddell, D. Gust, C. R. Timmel, P. J. Hore, Nature 2008, 453, 387.
J. R. Fernández, S. Garcia, E. S. Sanz‐Pérez, Ind. Eng. Chem. Res. 2020, 59, 6767.
S. W. Lee, S. B. Park, S. K. Jeong, K. S. Lim, S. H. Lee, M. C. Trachtenberg, Micron 2010, 41, 273.
R. Chacartegui, A. Alovisio, C. Ortiz, J. M. Valverde, V. Verda, J. A. Becerra, Appl. Energy 2016, 173, 589.
F. Bialas, D. Reichinger, C. F. W. Becker, Enzyme Microb. Technol. 2021, 150, 109864.
D. Reichinger, M. Reithofer, M. Hohagen, M. Drinic, J. Tobias, U. Wiedermann, F. Kleitz, B. Jahn‐Schmid, C. F. W. Becker, Pharmaceutics 2022, 15, 121.
T. L. Nguyen, B. G. Cha, Y. Choi, J. Im, J. Kim, Biomaterials 2020, 239, 119859.
S. Yao, B. Jin, Z. Liu, C. Shao, R. Zhao, X. Wang, R. Tang, Adv. Mater. 2017, 29, 1605903.
C. Heintze, P. Formanek, D. Pohl, J. Hauptstein, B. Rellinghaus, N. Kröger, BMC Materials 2020, 2, 11.
M. Sumper, E. Brunner, Adv. Funct. Mater. 2006, 16, 17.
N. Kröger, S. Lorenz, E. Brunner, M. Sumper, Science 2002, 298, 584.
J. S. Evans, CrystEngComm 2013, 15, 8388.
M. Sumper, Science 2002, 295, 2430.
L. Chiappisi, I. Hoffmann, M. Gradzielski, Soft Matter 2013, 9, 3896.
V. S. Meka, M. K. G. Sing, M. R. Pichika, S. R. Nali, V. R. M. Kolapalli, P. Kesharwani, Drug Discov Today 2017, 22, 1697.
F. Daus, X. Xie, A. Geyer, Org. Biomol. Chem. 2022, 20, 3387.
D. Gebauer, A. Völkel, H. Cölfen, Science 2008, 322, 1819.
G. Mancardi, C. E. Hernandez Tamargo, D. Di Tommaso, N. H. de Leeuw, J. Mater. Chem. B 2017, 5, 7274.
G. Mancardi, U. Terranova, N. H. de Leeuw, Cryst. Growth Des. 2016, 16, 3353.
E. Ruiz‐Agudo, A. Burgos‐Cara, C. Ruiz‐Agudo, A. Ibanez‐Velasco, H. Colfen, C. Rodriguez‐Navarro, Nat. Commun. 2017, 8, 768.
D. Gebauer, M. Kellermeier, J. D. Gale, L. Bergstrom, H. Colfen, Chem. Soc. Rev. 2014, 43, 2348.
M. Kellermeier, D. Gebauer, E. Melero‐García, M. Drechsler, Y. Talmon, L. Kienle, H. Cölfen, J. M. García‐Ruiz, W. Kunz, Adv. Funct. Mater. 2012, 22, 4301.
C. Schaffer, K. Thompson, J. Phys. Chem. C 2008, 1121, 12653.
D. Zahn, ChemPhysChem 2015, 16, 2069.
M. Kamalov, A. Hajradini, C. Rentenberger, C. F. W. Becker, Mater. Lett. 2018, 212, 114.
A. Dey, P. H. Bomans, F. A. Muller, J. Will, P. M. Frederik, G. de With, N. A. Sommerdijk, Nat. Mater. 2010, 9, 1010.
R. Demichelis, P. Raiteri, J. D. Gale, D. Quigley, D. Gebauer, Nat. Commun. 2011, 2, 590.
W. J. Habraken, J. Tao, L. J. Brylka, H. Friedrich, L. Bertinetti, A. S. Schenk, A. Verch, V. Dmitrovic, P. H. Bomans, P. M. Frederik, J. Laven, P. van der Schoot, B. Aichmayer, G. de With, J. J. DeYoreo, N. A. Sommerdijk, Nat. Commun. 2013, 4, 1507.
A. Carino, C. Ludwig, A. Cervellino, E. Muller, A. Testino, Acta Biomater. 2018, 74, 478.
D. Gebauer, S. E. Wolf, J. Am. Chem. Soc. 2019, 141, 4490.
L. M. Epasto, T. Georges, A. Selimović, J. M. Guigner, T. Azaïs, D. Kurzbach, Anal. Chem. 2021, 93, 10204.
J. Strobl, F. Kozak, M. Kamalov, D. Reichinger, D. Kurzbach, C. F. Becker, Adv. Mater. 2023, 35, 2207586.
K. G. Sprenger, A. Prakash, G. Drobny, J. Pfaendtner, Langmuir 2018, 34, 1199.
H. Lutz, V. Jaeger, L. Schmüser, M. Bonn, J. Pfaendtner, T. Weidner, Angewandte Chemie – Int. Ed. 2017, 56, 8277.
H. Lu, H. Lutz, S. J. Roeters, M. A. Hood, A. Schafer, R. Munoz‐Espi, R. Berger, M. Bonn, T. Weidner, J. Am. Chem. Soc. 2018, 140, 2793.
H. Lu, A. Schafer, H. Lutz, S. J. Roeters, I. Lieberwirth, R. Munoz‐Espi, M. A. Hood, M. Bonn, T. Weidner, J. Phys. Chem. Lett. 2019, 10, 2170.
S. Kumar, F. Natalio, R. Elbaum, J. Struct. Biol. 2021, 213, 107665.
H. Zhai, T. Bendikov, A. Gal, Angew Chem Int Ed Engl 2022, 61, e202115930.
H. Zhai, Y. Fan, W. Zhang, N. Varsano, A. Gal, ACS Biomater. Sci. Eng. 2023, 9, 601.
Q. Li, Y. Wang, G. Zhang, R. Su, W. Qi, Chem. Soc. Rev. 2023, 52, 1549.
S. Guseva, V. Schnapka, W. Adamski, D. Maurin, R. W. H. Ruigrok, N. Salvi, M. Blackledge, J. Am. Chem. Soc. 2023, 145, 10548.
C. C. Lechner, C. F. W. Becker, J. Pept. Sci. 2014, 20, 152.
L. Senior, M. P. Crump, C. Williams, P. J. Booth, S. Mann, A. W. Perriman, P. Curnow, J. Mater. Chem. B 2015, 3, 2607.
C. N. Pace, G. R. Grimsley, J. M. Scholtz, J. Biol. Chem. 2009, 284, 13285.
M. Śmiechowski, Chem. Phys. Lett. 2010, 501, 123.
N. Kröger, R. Deutzmann, M. Sumper, Science 1999, 286, 1129.
F. Bruno, L. Gigli, E. Ravera, Journal of Composites Science 2023, 7, 188.
M. Rubinstein, R. H. Colby, Polymer physics, Oxford University Press, New York 2003, Vol. 23.
M. Lin, H. M. Lindsay, D. Weitz, R. Ball, R. Klein, P. Meakin, Nature 1989, 339, 360.
S. Lazzari, L. Nicoud, B. Jaquet, M. Lattuada, M. Morbidelli, Adv. Colloid Interface Sci. 2016, 235, 1.
A. A. Polyansky, L. D. Gallego, R. G. Efremov, A. Kohler, B. Zagrovic, Elife 2023, 12, e80038.
S. J. Roeters, R. Mertig, H. Lutz, A. Roehrich, G. Drobny, T. Weidner, J. Phys. Chem. Lett. 2021, 12, 9657.
C. C. Lechner, C. F. W. Becker, Marine Drugs 2015, 13, 5297.
L. Gascoigne, J. R. Magana, D. L. Atkins, C. C. M. Sproncken, B. Gumi‐Audenis, S. M. C. Schoenmakers, D. Wakeham, E. J. Wanless, I. K. Voets, J. Colloid Interface Sci. 2021, 598, 206.
T. Kim, B. Tsang, R. M. Vernon, N. Sonenberg, L. E. Kay, J. D. Forman‐Kay, Science 2019, 365, 825.
P. Blondeau, M. Segura, R. Perez‐Fernandez, J. de Mendoza, Chem. Soc. Rev. 2007, 36, 198.
M. R. Knecht, D. W. Wright, Chem. Commun. 2003, 3, 3038.
D. Kurzbach, M. N. Reh, D. Hinderberger, ChemPhysChem 2011, 12, 3566.
M. R. Knecht, D. W. Wright, Langmuir 2004, 20, 4728.
B. Luy, J. Marino, J. Am. Chem. Soc. 2001, 123, 11306.
X. Pan, H. Wang, C. Li, J. Z. H. Zhang, C. Ji, J. Chem. Inf. Model. 2021, 61, 3159.
D. J. Belton, S. V. Patwardhan, V. V. Annenkov, E. N. Danilovtseva, C. C. Perry, Proc. Natl. Acad. Sci. USA 2008, 105, 5963.
S. P. Maddala, W. C. Liao, R. R. M. Joosten, M. Soleimani, R. Tuinier, H. Friedrich, R. van Benthem, Commun Chem 2021, 4, 160.
M. Rubinstein, R. H. Colby, Polymer Physics, Oxford University Press, New York 2003.
https://digital.lib.washington.edu/researchworks/bitstream/handle/1773/24145/Zane_washington_0250E_12264.pdf?sequence=1&isAllowed=y
M. Ndao, G. Goobes, P. S. Emani, G. P. Drobny, Langmuir 2018, 34, 8678.
E. Ravera, T. Martelli, Y. Geiger, M. Fragai, G. Goobes, C. Luchinat, Coord. Chem. Rev. 2016, 327, 110.
P. Schanda, E. Kupce, B. Brutscher, J. Biomol. NMR 2005, 33, 199.
G. Pohnert, Angewandte Chemie – Int. Ed. 2002, 41, 3167.
D. Otzen, Scientifica 2012, 2012, 1.
C. Mao, J. Sampath, J. Pfaendtner, ChemBioChem 2024, 202300788.
D. Kurzbach, W. Hassouneh, J. R. McDaniel, E. A. Jaumann, A. Chilkoti, D. Hinderberger, J. Am. Chem. Soc. 2013, 135, 11299.
D. Kurzbach, M. J. N. Junk, D. Hinderberger, Macromol. Rapid Commun. 2013, 34, 119.
M. Hemmelmann, D. Kurzbach, K. Koynov, D. Hinderberger, R. Zentel, Biomacromolecules 2012, 13, 4065.
D. Kurzbach, V. S. Wilms, H. Frey, D. Hinderberger, ACS Macro Lett. 2013, 2, 128.
K. Murata, H. Tanaka, Nat. Mater. 2012, 11, 436.
Z. Zhao, C. A. Angell, Angew Chem Int Ed Engl 2016, 55, 2474.
S. E. Reichheld, L. D. Muiznieks, F. W. Keeley, S. Sharpe, Proc Natl Acad Sci 2017, 114, E4408.
I. A. Antifeeva, A. V. Fonin, A. S. Fefilova, O. V. Stepanenko, O. I. Povarova, S. A. Silonov, I. M. Kuznetsova, V. N. Uversky, K. K. Turoverov, Cell. Mol. Life Sci. 2022, 79, 251.
P. Schanda, V. Forge, B. Brutscher, Proc. Natl. Acad. Sci. USA 2007, 104, 11257.
P. Schanda, B. Brutscher, J. Am. Chem. Soc. 2005, 127, 8014.
S. Gil, T. Hosek, Z. Solyom, R. Kummerle, B. Brutscher, R. Pierattelli, I. C. Felli, Angew Chem Int. Ed. Engl. 2013, 52, 11808.
L. Castanar, G. D. Poggetto, A. A. Colbourne, G. A. Morris, M. Nilsson, Magn. Reson. Chem. 2018, 56, 546.
E. O. Stejskal, J. E. Tanner, J. Chem. Phys. 1965, 42, 288.
T. Charles, L. H. Maurice, J. Electrochem. Soc. 1962, 109, 98C.
A. Einstein, Ann. Phys. 1905, 322, 549.
S. Georg Gabriel, Transactions of the Chambridge Philosophical Society 1850, 11, 8.
S. Panchal, N. Bahavesh, R. Hosur, J. Biomol. NMR 2001, 20, 135.
F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer, A. Bax, J. Biomol. NMR 1995, 6, 277.
W. Lee, M. Tonelli, J. L. Markley, Bioinformatics 2015, 31, 1325.
C. C. Lechner, C. F. Becker, J. Pept. Sci. 2014, 20, 152.
S. Singh, H. Singh, A. Tuknait, K. Chaudhary, B. Singh, S. Kumaran, G. P. Raghava, Biol. Direct 2015, 10, 73.
H. Kaur, A. Garg, G. P. S. Raghava, Protein Pept. Lett. 2007, 14, 626.
E. Krieger, G. Vriend, Bioinformatics 2014, 30, 2981.
E. Krieger, G. Vriend, J. Comput. Chem. 2015, 36, 996.
J. W. Ponder, D. A. Case, Adv. Protein Chem. 2003, 66, 27.
W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R. W. Impey, M. L. Klein, J. Chem. Phys. 1983, 79, 926.
U. Essmann, L. Perera, M. L. Berkowitz, T. Darden, H. Lee, L. G. Pedersen, J. Chem. Phys. 1995, 103, 8577.
H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. DiNola, J. R. Haak, J. Chem. Phys. 1984, 81, 3684.
M. Nygaard, B. B. Kragelund, E. Papaleo, K. Lindorff‐Larsen, Biophys. J. 2017, 113, 550.
D. Svergun, C. Barberato, M. H. Koch, J. Appl. Crystallogr. 1995, 28, 768.
G. Beaucage, J. Appl. Crystallogr. 1995, 28, 717.
L. Senior, M. P. Crump, C. Williams, P. J. Booth, S. Mann, A. W. Perriman, P. Curnow, J. Mater. Chem. B 2015, 3, 2607.