The STOIC2021 COVID-19 AI challenge: Applying reusable training methodologies to private data.

COVID-19 Machine learning Medical image analysis challenge

Journal

Medical image analysis
ISSN: 1361-8423
Titre abrégé: Med Image Anal
Pays: Netherlands
ID NLM: 9713490

Informations de publication

Date de publication:
05 Jun 2024
Historique:
received: 23 07 2023
revised: 11 01 2024
accepted: 03 06 2024
medline: 14 6 2024
pubmed: 14 6 2024
entrez: 14 6 2024
Statut: aheadofprint

Résumé

Challenges drive the state-of-the-art of automated medical image analysis. The quantity of public training data that they provide can limit the performance of their solutions. Public access to the training methodology for these solutions remains absent. This study implements the Type Three (T3) challenge format, which allows for training solutions on private data and guarantees reusable training methodologies. With T3, challenge organizers train a codebase provided by the participants on sequestered training data. T3 was implemented in the STOIC2021 challenge, with the goal of predicting from a computed tomography (CT) scan whether subjects had a severe COVID-19 infection, defined as intubation or death within one month. STOIC2021 consisted of a Qualification phase, where participants developed challenge solutions using 2000 publicly available CT scans, and a Final phase, where participants submitted their training methodologies with which solutions were trained on CT scans of 9724 subjects. The organizers successfully trained six of the eight Final phase submissions. The submitted codebases for training and running inference were released publicly. The winning solution obtained an area under the receiver operating characteristic curve for discerning between severe and non-severe COVID-19 of 0.815. The Final phase solutions of all finalists improved upon their Qualification phase solutions.

Identifiants

pubmed: 38875741
pii: S1361-8415(24)00155-5
doi: 10.1016/j.media.2024.103230
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

103230

Informations de copyright

Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Luuk H Boulogne (LH)

Radboud university medical center, P.O. Box 9101, 6500HB Nijmegen, The Netherlands. Electronic address: luuk.boulogne@radboudumc.nl.

Julian Lorenz (J)

University of Augsburg, Universitätsstraße 2, 86159 Augsburg, Germany. Electronic address: julian.lorenz@uni-a.de.

Daniel Kienzle (D)

University of Augsburg, Universitätsstraße 2, 86159 Augsburg, Germany.

Robin Schön (R)

University of Augsburg, Universitätsstraße 2, 86159 Augsburg, Germany.

Katja Ludwig (K)

University of Augsburg, Universitätsstraße 2, 86159 Augsburg, Germany.

Rainer Lienhart (R)

University of Augsburg, Universitätsstraße 2, 86159 Augsburg, Germany.

Simon Jégou (S)

Independent researcher. Electronic address: simon.jegou.ia@gmail.com.

Guang Li (G)

Keya medical technology co. ltd, Floor 20, Building A, 1 Ronghua South Road, Yizhuang Economic Development Zone, Daxing District, Beijing, PR China. Electronic address: guangl@keyamedical.com.

Cong Chen (C)

Keya medical technology co. ltd, Floor 20, Building A, 1 Ronghua South Road, Yizhuang Economic Development Zone, Daxing District, Beijing, PR China.

Qi Wang (Q)

Keya medical technology co. ltd, Floor 20, Building A, 1 Ronghua South Road, Yizhuang Economic Development Zone, Daxing District, Beijing, PR China.

Derik Shi (D)

Keya medical technology co. ltd, Floor 20, Building A, 1 Ronghua South Road, Yizhuang Economic Development Zone, Daxing District, Beijing, PR China.

Mayug Maniparambil (M)

ML-Labs, Dublin City University, N210, Marconi building, Dublin City University, Glasnevin, Dublin 9, Ireland. Electronic address: mayug.maniparambil2@mail.dcu.ie.

Dominik Müller (D)

University of Augsburg, Universitätsstraße 2, 86159 Augsburg, Germany; Faculty of Applied Computer Science, University of Augsburg, Germany.

Silvan Mertes (S)

Faculty of Applied Computer Science, University of Augsburg, Germany.

Niklas Schröter (N)

Faculty of Applied Computer Science, University of Augsburg, Germany.

Fabio Hellmann (F)

Faculty of Applied Computer Science, University of Augsburg, Germany.

Miriam Elia (M)

Faculty of Applied Computer Science, University of Augsburg, Germany. Electronic address: miriam.elia@informatik.uni-augsburg.de.

Ine Dirks (I)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium. Electronic address: ine.dirks@vub.be.

Matías Nicolás Bossa (MN)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium.

Abel Díaz Berenguer (AD)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium.

Tanmoy Mukherjee (T)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium.

Jef Vandemeulebroucke (J)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium.

Hichem Sahli (H)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium.

Nikos Deligiannis (N)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium.

Panagiotis Gonidakis (P)

Vrije Universiteit Brussel, Department of Electronics and Informatics, Pleinlaan 2, 1050 Brussels, Belgium; imec, Kapeldreef 75, 3001 Leuven, Belgium.

Ngoc Dung Huynh (ND)

Deakin University, Geelong, Australia.

Imran Razzak (I)

University of New South Wales, Sydney, Australia. Electronic address: imran.razzak@deakin.edu.au.

Reda Bouadjenek (R)

Deakin University, Geelong, Australia.

Mario Verdicchio (M)

IRCCS SYNLAB SDN, Naples, Italy. Electronic address: mario.verdicchio@synlab.it.

Pasquale Borrelli (P)

IRCCS SYNLAB SDN, Naples, Italy.

Marco Aiello (M)

IRCCS SYNLAB SDN, Naples, Italy.

James A Meakin (JA)

Radboud university medical center, P.O. Box 9101, 6500HB Nijmegen, The Netherlands.

Alexander Lemm (A)

Amazon Web Services, Marcel-Breuer-Str. 12, 80807 München, Germany.

Christoph Russ (C)

Amazon Web Services, Marcel-Breuer-Str. 12, 80807 München, Germany.

Razvan Ionasec (R)

Amazon Web Services, Marcel-Breuer-Str. 12, 80807 München, Germany.

Nikos Paragios (N)

Keya medical technology co. ltd, Floor 20, Building A, 1 Ronghua South Road, Yizhuang Economic Development Zone, Daxing District, Beijing, PR China; TheraPanacea, 75004, Paris, France.

Bram van Ginneken (B)

Radboud university medical center, P.O. Box 9101, 6500HB Nijmegen, The Netherlands.

Marie-Pierre Revel-Dubois (MP)

Department of Radiology, Université de Paris, APHP, Hôpital Cochin, 27 rue du Fg Saint Jacques, 75014 Paris, France.

Classifications MeSH