Nasal Brushing Molecular Endotyping Distinguishes CRSwNP Patients with Better Response to Dupilumab.

Chronic rhinosinusitis with nasal polyps IL-4 receptor α inhibition dupilumab endotype signatures gene expression transcriptional clusters transcriptome type 2 inflammation

Journal

The Journal of allergy and clinical immunology
ISSN: 1097-6825
Titre abrégé: J Allergy Clin Immunol
Pays: United States
ID NLM: 1275002

Informations de publication

Date de publication:
14 Jun 2024
Historique:
received: 23 06 2023
revised: 22 05 2024
accepted: 28 05 2024
medline: 17 6 2024
pubmed: 17 6 2024
entrez: 16 6 2024
Statut: aheadofprint

Résumé

There is evidence of pathophysiologic diversity in chronic rhinosinusitis with nasal polyps (CRSwNP), but data characterizing the molecular endotypes of CRSwNP and their association with treatment is lacking. To identify gene signatures associated with CRSwNP endotypes, clinical features, and dupilumab treatment response. Nasal brushing samples were collected from 89 patients randomized to dupilumab 300 mg every 2 weeks or placebo in the SINUS-52 trial (NCT02898454). Microarrays were used to identify transcriptional clusters and assess the relationship between gene expression and baseline clinical features and clinical response to dupilumab. Endotype signatures were determined using differential expression analysis. Two distinct transcriptional clusters (C1 and C2) were identified, both with elevated type 2 biomarkers. At baseline, C2 patients had higher mean Nasal Polyp Score and higher type 2 biomarker levels than C1 patients. At Week 24, significant improvements in clinical outcomes (dupilumab vs placebo) were observed in both clusters, although the magnitude of improvements was significantly greater in C2 than C1, and more C2 patients demonstrated clinically meaningful responses. Gene sets enrichment analyses supported the existence of two molecular endotypes: C2 was enriched in genes associated with type 2 inflammation (including periostin, cadherin-26, and type 2 cysteine protease inhibitors), while C1 was enriched in genes associated with T cell activation and interleukin-12 production. Two distinct gene signatures associated with CRSwNP clinical features were identified; the endotype signatures were associated with clinical outcome measures and magnitude of dupilumab response.

Sections du résumé

BACKGROUND BACKGROUND
There is evidence of pathophysiologic diversity in chronic rhinosinusitis with nasal polyps (CRSwNP), but data characterizing the molecular endotypes of CRSwNP and their association with treatment is lacking.
OBJECTIVES OBJECTIVE
To identify gene signatures associated with CRSwNP endotypes, clinical features, and dupilumab treatment response.
METHODS METHODS
Nasal brushing samples were collected from 89 patients randomized to dupilumab 300 mg every 2 weeks or placebo in the SINUS-52 trial (NCT02898454). Microarrays were used to identify transcriptional clusters and assess the relationship between gene expression and baseline clinical features and clinical response to dupilumab. Endotype signatures were determined using differential expression analysis.
RESULTS RESULTS
Two distinct transcriptional clusters (C1 and C2) were identified, both with elevated type 2 biomarkers. At baseline, C2 patients had higher mean Nasal Polyp Score and higher type 2 biomarker levels than C1 patients. At Week 24, significant improvements in clinical outcomes (dupilumab vs placebo) were observed in both clusters, although the magnitude of improvements was significantly greater in C2 than C1, and more C2 patients demonstrated clinically meaningful responses. Gene sets enrichment analyses supported the existence of two molecular endotypes: C2 was enriched in genes associated with type 2 inflammation (including periostin, cadherin-26, and type 2 cysteine protease inhibitors), while C1 was enriched in genes associated with T cell activation and interleukin-12 production.
CONCLUSION CONCLUSIONS
Two distinct gene signatures associated with CRSwNP clinical features were identified; the endotype signatures were associated with clinical outcome measures and magnitude of dupilumab response.

Identifiants

pubmed: 38880251
pii: S0091-6749(24)00606-7
doi: 10.1016/j.jaci.2024.05.030
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

Copyright © 2024. Published by Elsevier Inc.

Auteurs

Kaitlyn Gayvert (K)

Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA.

Martin Desrosiers (M)

Centre de Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montreal, QC, Canada.

Tanya M Laidlaw (TM)

Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.

Leda P Mannent (LP)

Sanofi, Chilly-Mazarin, France.

Kiran Patel (K)

Sanofi, Cambridge, MA, USA.

Julie Horowitz (J)

Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA.

Nikhil Amin (N)

Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA.

Alexandre Jagerschmidt (A)

Sanofi, Chilly-Mazarin, France.

Jennifer D Hamilton (JD)

Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA.

Wei Keat Lim (WK)

Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA. Electronic address: weikeat.lim@regeneron.com.

Sivan Harel (S)

Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA.

Classifications MeSH