NanoConstruct: A web application builder of ellipsoidal nanoparticles for the investigation of their crystal growth, stability, and the calculation of atomistic descriptors.

Automation Crystal growth Descriptor Digital construction Ellipsoidal Energy minimization Nanoparticle Stability Zirconia (ZrO2)

Journal

Computational and structural biotechnology journal
ISSN: 2001-0370
Titre abrégé: Comput Struct Biotechnol J
Pays: Netherlands
ID NLM: 101585369

Informations de publication

Date de publication:
Dec 2024
Historique:
received: 08 04 2024
revised: 21 05 2024
accepted: 21 05 2024
medline: 17 6 2024
pubmed: 17 6 2024
entrez: 17 6 2024
Statut: epublish

Résumé

NanoConstruct is a state-of-the-art computational tool that enables a) the digital construction of ellipsoidal neutral energy minimized nanoparticles (NPs) in vacuum through its graphical user-friendly interface, and b) the calculation of NPs atomistic descriptors. It allows the user to select NP's shape and size by inserting its ellipsoidal axes and rotation angle while the NP material is selected by uploading its Crystallography Information File (CIF). To investigate the stability of materials not yet synthesised, NanoConstruct allows the substitution of the chemical elements of an already synthesized material with chemical elements that belong into the same group and neighbouring rows of the periodic table. The process is divided into three stages: 1) digital construction of the unit cell, 2) digital construction of NP using geometry rules and keeping its stoichiometry and 3) energy minimization of the geometrically constructed NP and calculation of its atomistic descriptors. In this study, NanoConstruct was applied for the investigation of the crystal growth of Zirconia (ZrO

Identifiants

pubmed: 38883847
doi: 10.1016/j.csbj.2024.05.039
pii: S2001-0370(24)00185-5
pmc: PMC11179235
doi:

Types de publication

Journal Article

Langues

eng

Pagination

81-90

Informations de copyright

© 2024 The Authors.

Déclaration de conflit d'intérêts

PK, DZ, NS, AT and AA are employed by NovaMechanics a cheminformatics and materials informatics company.

Auteurs

Panagiotis D Kolokathis (PD)

NovaMechanics MIKE, Piraeus 18545, Greece.
Entelos Institute, Larnaca 6059, Cyprus.

Dimitrios Zouraris (D)

NovaMechanics Ltd, Nicosia 1070, Cyprus.
Entelos Institute, Larnaca 6059, Cyprus.

Evangelos Voyiatzis (E)

NovaMechanics Ltd, Nicosia 1070, Cyprus.

Nikolaos K Sidiropoulos (NK)

NovaMechanics MIKE, Piraeus 18545, Greece.
Entelos Institute, Larnaca 6059, Cyprus.

Andreas Tsoumanis (A)

NovaMechanics MIKE, Piraeus 18545, Greece.
NovaMechanics Ltd, Nicosia 1070, Cyprus.

Georgia Melagraki (G)

Division of Physical Sciences and Applications, Hellenic Military Academy, Vari 16672, Greece.

Kaido Tämm (K)

Institute of Chemistry, University of Tartu, Tartu 50090, Estonia.

Iseult Lynch (I)

Entelos Institute, Larnaca 6059, Cyprus.
School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, United Kingdom.

Antreas Afantitis (A)

NovaMechanics MIKE, Piraeus 18545, Greece.
NovaMechanics Ltd, Nicosia 1070, Cyprus.
Entelos Institute, Larnaca 6059, Cyprus.

Classifications MeSH