Operationalizing and digitizing person-centered daily functioning: a case for functionomics.

Big data Information technology Interoperability Personalized healthcare Real-world data

Journal

BMC medical informatics and decision making
ISSN: 1472-6947
Titre abrégé: BMC Med Inform Decis Mak
Pays: England
ID NLM: 101088682

Informations de publication

Date de publication:
27 Jun 2024
Historique:
received: 04 04 2023
accepted: 21 06 2024
medline: 28 6 2024
pubmed: 28 6 2024
entrez: 27 6 2024
Statut: epublish

Résumé

An ever-increasing amount of data on a person's daily functioning is being collected, which holds information to revolutionize person-centered healthcare. However, the full potential of data on daily functioning cannot yet be exploited as it is mostly stored in an unstructured and inaccessible manner. The integration of these data, and thereby expedited knowledge discovery, is possible by the introduction of functionomics as a complementary 'omics' initiative, embracing the advances in data science. Functionomics is the study of high-throughput data on a person's daily functioning, that can be operationalized with the International Classification of Functioning, Disability and Health (ICF).A prerequisite for making functionomics operational are the FAIR (Findable, Accessible, Interoperable, and Reusable) principles. This paper illustrates a step by step application of the FAIR principles for making functionomics data machine readable and accessible, under strictly certified conditions, in a practical example. Establishing more FAIR functionomics data repositories, analyzed using a federated data infrastructure, enables new knowledge generation to improve health and person-centered healthcare. Together, as one allied health and healthcare research community, we need to consider to take up the here proposed methods.

Identifiants

pubmed: 38937817
doi: 10.1186/s12911-024-02584-2
pii: 10.1186/s12911-024-02584-2
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

184

Informations de copyright

© 2024. The Author(s).

Références

Cusumano D, Dinapoli N, Boldrini L, Chiloiro G, Gatta R, Masciocchi C, et al. Fractal-based radiomic approach to predict complete pathological response after chemo-radiotherapy in rectal cancer. Radiol Med. 2018;123(4):286–95.
doi: 10.1007/s11547-017-0838-3 pubmed: 29230678
Lambin P, Leijenaar RTH, Deist TM, Peerlings J, de Jong EEC, van Timmeren J, et al. Radiomics: the bridge between medical imaging and personalized medicine. Nat Reviews Clin Oncol. 2017;14(12):749–62.
doi: 10.1038/nrclinonc.2017.141
Rhrissorrakrai K, Koyama T, Parida L. Watson for genomics: moving personalized medicine forward. Trends Cancer. 2016;2(8):392–5.
doi: 10.1016/j.trecan.2016.06.008 pubmed: 28741491
Ibrahim R, Pasic M, Yousef GM. Omics for personalized medicine: defining the current we swim in. Expert Rev Mol Diagn. 2016;16(7):719–22.
doi: 10.1586/14737159.2016.1164601 pubmed: 26959799
Micheel CM, Nass SJ, Omenn GS, editors. Evolution of translational omics: lessons learned and the path forward. Washington (DC): National Academies Press (US); 2012.
Vailati-Riboni M, Palombo V, Loor JJ. What are omics sciences? In: Ametaj BN, editor. Periparturient diseases of dairy cows: a systems biology approach. Cham: Springer International Publishing; 2017. p. 1–7.
Research N, Transcriptomics. Nature Research;  https://www.nature.com/subjects/transcriptomics .
Gillies RJ, Kinahan PE, Hricak H. Radiomics: images are more than pictures, they are data. Radiology. 2016;278(2):563–77.
doi: 10.1148/radiol.2015151169 pubmed: 26579733
Heerkens YF, de Weerd M, Huber M, de Brouwer CPM, van der Veen S, Perenboom RJM, et al. Reconsideration of the scheme of the international classification of functioning, disability and health: incentives from the Netherlands for a global debate. Disabil Rehabil. 2017;40(5):603–11.
doi: 10.1080/09638288.2016.1277404 pubmed: 28129712
Beyan O, Choudhury A, Soest Jv, Kohlbacher O, Zimmermann L, Stenzhorn H, et al. Distributed analytics on sensitive medical data: the personal health train. Data Intell. 2020;2(1–2):96–107.
doi: 10.1162/dint_a_00032
Wilkinson MD, Sansone S-A, Schultes E, Doorn P, Bonino da Silva Santos LO, Dumontier M. A design framework and exemplar metrics for FAIRness. Sci Data. 2018;5(1):180118.
doi: 10.1038/sdata.2018.118 pubmed: 29944145 pmcid: 6018520
Stucki G. International Classification of Functioning, disability, and health (ICF): a promising framework and classification for rehabilitation medicine. Am J Phys Med Rehabil. 2005;84(10):733–40.
doi: 10.1097/01.phm.0000179521.70639.83 pubmed: 16205428
Kostanjsek N. Use of The International Classification of Functioning, Disability and Health (ICF) as a conceptual framework and common language for disability statistics and health information systems. BMC Public Health. 2011;11 Suppl 4(Suppl 4):S3. https://doi.org/10.1186/1471-2458-11-S4-S3 .
Krumholz HM. Big data and new knowledge in medicine: the thinking, training, and tools needed for a learning health system. Health Aff (Millwood). 2014;33(7):1163–70.
doi: 10.1377/hlthaff.2014.0053 pubmed: 25006142
Vrijheid M. The exposome: a new paradigm to study the impact of environment on health. Thorax. 2014;69(9):876–8.
doi: 10.1136/thoraxjnl-2013-204949 pubmed: 24906490
(KNGF) KNGvF. FysioFacts. https://www.kngf.nl/KNGF/Missie+%26+Visie/feiten--cijfers.html ; 2019.
Eurostat. Healthcare personnel statistics - dentists, pharmacists and physiotherapists https://ec.europa.eu/eurostat/statistics-explained/index.php/Healthcare_personnel_statistics_-_dentists,_pharmacists_and_physiotherapists 2020.
Elflein J, Number of physical therapists in the U.S. 2001–2016 https://www.statista.com/statistics/185731/number-of-physical-therapists-in-the-us-since-2001/#:~:text=Number%20of%20physical%20therapists%20in%20the%20U.S.%202001%2D2016&text=In%202001%2C%20there%20were%20126%2C450,were%20216%2C920%20physical%20therapists%20employed.2016
Lustberg T, van Soest J, Jochems A, Deist T, van Wijk Y, Walsh S, et al. Big data in radiation therapy: challenges and opportunities. Br J Radiol. 2017;90(1069):20160689.
doi: 10.1259/bjr.20160689 pubmed: 27781485
Lambin P, Zindler J, Vanneste BGL, De Voorde LV, Eekers D, Compter I, et al. Decision support systems for personalized and participative radiation oncology. Adv Drug Deliv Rev. 2017;109:131–53.
doi: 10.1016/j.addr.2016.01.006 pubmed: 26774327
Bates DW, Saria S, Ohno-Machado L, Shah A, Escobar G. Big data in health care: using analytics to identify and manage high-risk and high-cost patients. Health Aff. 2014;33(7):1123–31.
doi: 10.1377/hlthaff.2014.0041
Skripcak T, Belka C, Bosch W, Brink C, Brunner T, Budach V, et al. Creating a data exchange strategy for radiotherapy research: towards federated databases and anonymised public datasets. Radiother Oncol. 2014;113(3):303–9.
doi: 10.1016/j.radonc.2014.10.001 pubmed: 25458128 pmcid: 4648243
Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, et al. The FAIR Guiding principles for scientific data management and stewardship. Sci Data. 2016;3(1):160018.
doi: 10.1038/sdata.2016.18 pubmed: 26978244 pmcid: 4792175
Berrios DC, Beheshti A, Costes SV. FAIRness and usability for open-access omics data systems. AMIA Annu Symp Proc. 2018;2018:232–41.
pubmed: 30815061 pmcid: 6371294
Mons B, Neylon C, Velterop J, Dumontier M, da Silva Santos LOB, Wilkinson MD. Cloudy, increasingly FAIR; revisiting the FAIR data guiding principles for the European open Science cloud. Inform Serv Use. 2017;37:49–56.
doi: 10.3233/ISU-170824
Traverso A, van Soest J, Wee L, Dekker A. The radiation oncology ontology (ROO): publishing linked data in radiation oncology using semantic web and ontology techniques. Med Phys. 2018;45(10):e854–62.
doi: 10.1002/mp.12879 pubmed: 30144092
Janssen ER, Osong B, van Soest J, Dekker A, van Meeteren NL, Willems PC, Punt IM. Exploring Associations of Preoperative Physical Performance With Postoperative Outcomes After Lumbar Spinal Fusion: A Machine Learning Approach. Arch Phys Med Rehabil. 2021;102(7):1324–1330.e3. https://doi.org/10.1016/j.apmr.2021.02.013 .
doi: 10.1016/j.apmr.2021.02.013 pubmed: 33711278
Gruber TR. A translation approach to portable ontology specifications. Knowl Acquisition. 1993;5(2):199–220.
doi: 10.1006/knac.1993.1008
Choudhury A, Janssen E, Bongers BC, van Meeteren NLU, Dekker A, van Soest J. Colorectal cancer health and care quality indicators in a federated setting using the personal health train. BMC Med Inf Decis Mak. 2024;24(1):121.
doi: 10.1186/s12911-024-02526-y
Jochems A, Deist TM, van Soest J, Eble M, Bulens P, Coucke P, et al. Distributed learning: developing a predictive model based on data from multiple hospitals without data leaving the hospital – a real life proof of concept. Radiother Oncol. 2016;121(3):459–67.
doi: 10.1016/j.radonc.2016.10.002 pubmed: 28029405
Aerts HJWL, Velazquez ER, Leijenaar RTH, Parmar C, Grossmann P, Carvalho S, et al. Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nat Commun. 2014;5(1):4006.
doi: 10.1038/ncomms5006 pubmed: 24892406
Jochems A, Deist TM, El Naqa I, Kessler M, Mayo C, Reeves J, et al. Developing and validating a survival prediction model for NSCLC patients through distributed learning across 3 countries. Int J Radiat Oncol*Biol*Phys. 2017;99(2):344–52.
doi: 10.1016/j.ijrobp.2017.04.021 pmcid: 5575360
Alford VM, Ewen S, Webb GR, McGinley J, Brookes A, Remedios LJ. The use of the international classification of functioning, disability and health to understand the health and functioning experiences of people with chronic conditions from the person perspective: a systematic review. Disabil Rehabil. 2015;37(8):655–66.
doi: 10.3109/09638288.2014.935875 pubmed: 24986707
Cieza A, Stucki G. Content comparison of health-related quality of life (HRQOL) instruments based on the international classification of functioning, disability and health (ICF). Qual Life Res. 2005;14(5):1225–37.
doi: 10.1007/s11136-004-4773-0 pubmed: 16047499
Stucki G. ICF linking rules: an update based on lessons learned. J Rehabil Med. 2005;37(4):212–8.
doi: 10.1080/16501970510040263 pubmed: 16024476
Mons B. Invest 5% of research funds in ensuring data are reusable. Nature. 2020;578(7796):491.
doi: 10.1038/d41586-020-00505-7 pubmed: 32099131
Bruynseels K, Santoni de Sio F, van den Hoven J. Digital Twins in Health Care: Ethical Implications of an Emerging Engineering Paradigm. Front Genet. 2018;9:31.
Newman-Griffis DR, Hurwitz MB, McKernan GP, Houtrow AJ, Dicianno BE. A roadmap to reduce information inequities in disability with digital health and natural language processing. PLOS Digit Health. 2022;1(11):e0000135.
doi: 10.1371/journal.pdig.0000135 pubmed: 36812573 pmcid: 9931310
Tenopir C, Dalton ED, Allard S, Frame M, Pjesivac I, Birch B, et al. Changes in data sharing and data reuse practices and perceptions among scientists worldwide. PLoS ONE. 2015;10(8):e0134826.
doi: 10.1371/journal.pone.0134826 pubmed: 26308551 pmcid: 4550246
Popkin G. Data sharing and how it can benefit your scientific career. Nature. 2019;569(7756):445–7.
doi: 10.1038/d41586-019-01506-x pubmed: 31081499
Eisenhauer ER, Tait AR, Rieh SY, Arslanian-Engoren CM. Participants’ understanding of informed consent for biobanking: a systematic review. Clin Nurs Res. 2019;28(1):30–51.
doi: 10.1177/1054773817722690 pubmed: 28745067
Landi A, Thompson M, Giannuzzi V, Bonifazi F, Labastida I, da Silva Santos LOB, Roos M. The A of FAIR–as open as possible, as closed as necessary. Data Intell. 2020;2(1–2):47–55.
doi: 10.1162/dint_a_00027

Auteurs

Esther R C Janssen (ERC)

Radboud Institute for Health Sciences, IQ health, Radboud university medical centre, Nijmegen, The Netherlands. estherjanssen@viecuri.nl.
School of Allied Health, HAN University of Applied Sciences, Nijmegen, The Netherlands. estherjanssen@viecuri.nl.
Department of Orthopedic Surgery, VieCuri Medical Centre, Tegelseweg 210, Venlo, 5912 BL, The Netherlands. estherjanssen@viecuri.nl.

Ilona M Punt (IM)

Department of Orthopedics and Research School Caphri, Maastricht University Medical Centre+, Maastricht, The Netherlands.

Johan van Soest (J)

Brightlands Institute for Smart Society (BISS), Faculty of Science and Engineering (FSE), Maastricht University, Heerlen, The Netherlands.
Department of Radiation Oncology (Maastro), GROW-School for Oncology, Maastricht University Medical Centre+, Maastricht, The Netherlands.

Yvonne F Heerkens (YF)

Dutch Institute of Allied Health Care (NPi), Amersfoort, The Netherlands.
Research Group Occupation & Health, HAN University of Applied Sciences, Nijmegen, The Netherlands.

Hillegonda A Stallinga (HA)

University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.

Huib Ten Napel (H)

RIVM/ Dutch WHO-FIC Collaborating Centre, Bilthoven, The Netherlands.

Lodewijk W van Rhijn (LW)

Department of Orthopedic surgery, Utrecht University, Utrecht, The Netherlands.

Barend Mons (B)

Leiden University Medical Centre, Leiden, The Netherlands.
GO FAIR International Support & Coordination Office (GFISCO), Leiden, The Netherlands.

Andre Dekker (A)

Department of Radiation Oncology (Maastro), GROW-School for Oncology, Maastricht University Medical Centre+, Maastricht, The Netherlands.

Paul C Willems (PC)

Department of Orthopedics and Research School Caphri, Maastricht University Medical Centre+, Maastricht, The Netherlands.

Nico L U van Meeteren (NLU)

Top Sector Life Sciences and Health (Health~Holland), The Hague, The Netherlands.
Department of Anesthesiology, Erasmus Medical Centre, Rotterdam, The Netherlands.

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