High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector.

Accelerating voltage Advances in microscope hardware Alpine Direct detectors LKB1 Single-particle Cryo-EM

Journal

Journal of structural biology
ISSN: 1095-8657
Titre abrégé: J Struct Biol
Pays: United States
ID NLM: 9011206

Informations de publication

Date de publication:
27 Jun 2024
Historique:
received: 14 02 2024
revised: 03 06 2024
accepted: 26 06 2024
medline: 30 6 2024
pubmed: 30 6 2024
entrez: 29 6 2024
Statut: aheadofprint

Résumé

Developments in direct electron detector technology have played a pivotal role in enabling high-resolution structural studies by cryo-EM at 200 and 300 keV. Yet, theory and recent experiments indicate advantages to imaging at 100 keV, energies for which the current detectors have not been optimized. In this study, we evaluated the Gatan Alpine detector, designed for operation at 100 and 200 keV. Compared to the Gatan K3, Alpine demonstrated a significant DQE improvement at these voltages, specifically a ∼ 4-fold improvement at Nyquist at 100 keV. In single-particle cryo-EM experiments, Alpine datasets yielded better than 2 Å resolution reconstructions of apoferritin at 120 and 200 keV on a ThermoFisher Scientific (TFS) Glacios microscope fitted with a non-standard SP-Twin lens. We also achieved a ∼ 3.2 Å resolution reconstruction for a 115 kDa asymmetric protein complex, proving its effectiveness with complex biological samples. In-depth analysis revealed that Alpine reconstructions are comparable to K3 reconstructions at 200 keV, and remarkably, reconstruction from Alpine at 120 keV on a TFS Glacios surpassed all but the 300 keV data from a TFS Titan Krios with GIF/K3. Additionally, we show Alpine's capability for high-resolution data acquisition and screening on lower-end systems by obtaining ∼ 3 Å resolution reconstructions of apoferritin and aldolase at 100 keV and detailed 2D averages of a 55 kDa sample using a side-entry cryo holder. Overall, we show that Gatan Alpine performs well with the standard 200 keV imaging systems and may potentially capture the benefits of lower accelerating voltages, possibly bringing smaller sized particles within the scope of cryo-EM.

Identifiants

pubmed: 38944401
pii: S1047-8477(24)00048-0
doi: 10.1016/j.jsb.2024.108108
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

108108

Informations de copyright

Copyright © 2024. Published by Elsevier Inc.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: [S.M., D.J, B.C.L., C.C. and S.G. are employees of Gatan Inc., which developed and is marketing the Alpine and K3 cameras. All other authors declare no competing financial interests].

Auteurs

Lieza M Chan (LM)

Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, United States.

Brandon J Courteau (BJ)

Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, United States.

Allison Maker (A)

Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, United States.

Mengyu Wu (M)

Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA 92024, United States.

Benjamin Basanta (B)

Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA 92024, United States.

Hevatib Mehmood (H)

Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, United States.

David Bulkley (D)

Department of Biochemistry & Biophysics, University of California, San Francisco, CA 94158, United States.

David Joyce (D)

Gatan Inc., Pleasanton, CA, United States.

Brian C Lee (BC)

Gatan Inc., Pleasanton, CA, United States.

Stephen Mick (S)

Gatan Inc., Pleasanton, CA, United States.

Cory Czarnik (C)

Gatan Inc., Pleasanton, CA, United States.

Sahil Gulati (S)

Gatan Inc., Pleasanton, CA, United States.

Gabriel C Lander (GC)

Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA 92024, United States.

Kliment A Verba (KA)

Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, United States. Electronic address: kliment.verba@ucsf.edu.

Classifications MeSH