Linear ubiquitination regulates the KSHV replication and transcription activator protein to control infection.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
29 Jun 2024
29 Jun 2024
Historique:
received:
19
11
2023
accepted:
21
06
2024
medline:
2
7
2024
pubmed:
2
7
2024
entrez:
1
7
2024
Statut:
epublish
Résumé
Like many other viruses, KSHV has two life cycle modes: the latent phase and the lytic phase. The RTA protein from KSHV is essential for lytic reactivation, but how this protein's activity is regulated is not fully understood. Here, we report that linear ubiquitination regulates the activity of RTA during KSHV lytic reactivation and de novo infection. Overexpressing OTULIN inhibits KSHV lytic reactivation, whereas knocking down OTULIN or overexpressing HOIP enhances it. Intriguingly, we found that RTA is linearly polyubiquitinated by HOIP at K516 and K518, and these modifications control the RTA's nuclear localization. OTULIN removes linear polyubiquitin chains from cytoplasmic RTA, preventing its nuclear import. The RTA orthologs encoded by the EB and MHV68 viruses are also linearly polyubiquitinated and regulated by OTULIN. Our study establishes that linear polyubiquitination plays a critically regulatory role in herpesvirus infection, adding virus infection to the list of biological processes known to be controlled by linear polyubiquitination.
Identifiants
pubmed: 38951495
doi: 10.1038/s41467-024-49887-6
pii: 10.1038/s41467-024-49887-6
doi:
Substances chimiques
Immediate-Early Proteins
0
Trans-Activators
0
Rta protein, Human herpesvirus 8
0
Ubiquitin-Protein Ligases
EC 2.3.2.27
RNF31 protein, human
EC 2.3.2.27
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
5515Subventions
Organisme : National Natural Science Foundation of China (National Science Foundation of China)
ID : 31970158
Organisme : National Natural Science Foundation of China (National Science Foundation of China)
ID : 31571445
Informations de copyright
© 2024. The Author(s).
Références
Cesarman, E. et al. Kaposi sarcoma. Nat. Rev. Dis. Prim. 5, 9 (2019).
pubmed: 30705286
doi: 10.1038/s41572-019-0060-9
Chang, Y. et al. Identification of herpesvirus-like DNA sequences in AIDS-associated Kaposi’s sarcoma. Science 266, 1865–1869 (1994).
pubmed: 7997879
doi: 10.1126/science.7997879
Cesarman, E., Chang, Y., Moore, P. S., Said, J. W. & Knowles, D. M. Kaposi’s sarcoma-associated herpesvirus-like DNA sequences in AIDS-related body-cavity-based lymphomas. N. Engl. J. Med. 332, 1186–1191 (1995).
pubmed: 7700311
doi: 10.1056/NEJM199505043321802
Dittmer, D. P. & Damania, B. Kaposi sarcoma–associated herpesvirus: immunobiology, oncogenesis, and therapy. J. Clin. Investig. 126, 3165–3175 (2016).
pubmed: 27584730
pmcid: 5004954
doi: 10.1172/JCI84418
Boshoff, C. & Chang, Y. Kaposi’s sarcoma-associated herpesvirus: a new DNA tumor virus. Annu Rev. Med. 52, 453–470 (2001).
pubmed: 11160789
doi: 10.1146/annurev.med.52.1.453
Shaw, R. N., Arbiser, J. L. & Offermann, M. K. Valproic acid induces human herpesvirus 8 lytic gene expression in BCBL-1 cells. Aids 14, 899–902 (2000).
pubmed: 10839602
doi: 10.1097/00002030-200005050-00021
Klass, C. M., Krug, L. T., Pozharskaya, V. P. & Offermann, M. K. The targeting of primary effusion lymphoma cells for apoptosis by inducing lytic replication of human herpesvirus 8 while blocking virus production. Blood 105, 4028–4034 (2005).
pubmed: 15687238
pmcid: 1895088
doi: 10.1182/blood-2004-09-3569
Majerciak, V., Pripuzova, N., McCoy, J. P., Gao, S. J. & Zheng, Z. M. Targeted disruption of Kaposi’s sarcoma-associated herpesvirus ORF57 in the viral genome is detrimental for the expression of ORF59, K8alpha, and K8.1 and the production of infectious virus. J. Virol. 81, 1062–1071 (2007).
pubmed: 17108026
doi: 10.1128/JVI.01558-06
Li, D., Fu, W. & Swaminathan, S. Continuous DNA replication is required for late gene transcription and maintenance of replication compartments in gammaherpesviruses. PLoS Pathog. 14, e1007070 (2018).
pubmed: 29813138
pmcid: 5993329
doi: 10.1371/journal.ppat.1007070
Sun, R. et al. Kinetics of Kaposi’s sarcoma-associated herpesvirus gene expression. J. Virol. 73, 2232–2242 (1999).
pubmed: 9971806
pmcid: 104468
doi: 10.1128/JVI.73.3.2232-2242.1999
Lukac, D. M., Renne, R., Kirshner, J. R. & Ganem, D. Reactivation of Kaposi’s sarcoma-associated herpesvirus infection from latency by expression of the ORF 50 transactivator, a homolog of the EBV R protein. Virology 252, 304–312 (1998).
pubmed: 9878608
doi: 10.1006/viro.1998.9486
Combs, L. R., Spires, L. M., Alonso, J. D., Papp, B. & Toth, Z. KSHV RTA Induces Degradation of the Host Transcription Repressor ID2 To Promote the Viral Lytic Cycle. J. Virol. 96, e0010122 (2022).
pubmed: 35604218
doi: 10.1128/jvi.00101-22
Damania, B. Oncogenic gamma-herpesviruses: comparison of viral proteins involved in tumorigenesis. Nat. Rev. Microbiol 2, 656–668 (2004).
pubmed: 15263900
doi: 10.1038/nrmicro958
Lukac, D. M., Kirshner, J. R. & Ganem, D. Transcriptional activation by the product of open reading frame 50 of Kaposi’s sarcoma-associated herpesvirus is required for lytic viral reactivation in B cells. J. Virol. 73, 9348–9361 (1999).
pubmed: 10516043
pmcid: 112969
doi: 10.1128/JVI.73.11.9348-9361.1999
Bu, W. et al. Identification of direct transcriptional targets of the Kaposi’s sarcoma-associated herpesvirus Rta lytic switch protein by conditional nuclear localization. J. Virol. 82, 10709–10723 (2008).
pubmed: 18715905
pmcid: 2573185
doi: 10.1128/JVI.01012-08
Yang, Z., Yan, Z. & Wood, C. Kaposi’s sarcoma-associated herpesvirus transactivator RTA promotes degradation of the repressors to regulate viral lytic replication. J. Virol. 82, 3590–3603 (2008).
pubmed: 18216089
pmcid: 2268447
doi: 10.1128/JVI.02229-07
Gould, F., Harrison, S. M., Hewitt, E. W. & Whitehouse, A. Kaposi’s sarcoma-associated herpesvirus RTA promotes degradation of the Hey1 repressor protein through the ubiquitin proteasome pathway. J. Virol. 83, 6727–6738 (2009).
pubmed: 19369342
pmcid: 2698570
doi: 10.1128/JVI.00351-09
Zhao, Q. et al. Kaposi’s sarcoma-associated herpesvirus-encoded replication and transcription activator impairs innate immunity via ubiquitin-mediated degradation of myeloid differentiation factor 88. J. Virol. 89, 415–427 (2015).
pubmed: 25320320
doi: 10.1128/JVI.02591-14
Yu, Y., Wang, S. E. & Hayward, G. S. The KSHV immediate-early transcription factor RTA encodes ubiquitin E3 ligase activity that targets IRF7 for proteosome-mediated degradation. Immunity 22, 59–70 (2005).
pubmed: 15664159
doi: 10.1016/j.immuni.2004.11.011
Aneja, K. K. & Yuan, Y. Reactivation and Lytic Replication of Kaposi’s Sarcoma-Associated Herpesvirus: An Update. Front Microbiol 8, 613 (2017).
pubmed: 28473805
pmcid: 5397509
doi: 10.3389/fmicb.2017.00613
Gwack, Y. et al. Poly(ADP-ribose) polymerase 1 and Ste20-like kinase hKFC act as transcriptional repressors for gamma-2 herpesvirus lytic replication. Mol. Cell. Biol. 23, 8282–8294 (2003).
pubmed: 14585985
pmcid: 262387
doi: 10.1128/MCB.23.22.8282-8294.2003
Ko, Y. C. et al. Suppressive regulation of KSHV RTA with O-GlcNAcylation. J. Biomed. Sci. 19, 12 (2012).
pubmed: 22300411
pmcid: 3395832
doi: 10.1186/1423-0127-19-12
Damgaard, R. B. The ubiquitin system: from cell signalling to disease biology and new therapeutic opportunities. Cell Death Differ. 28, 423–426 (2021).
pubmed: 33446876
pmcid: 7862391
doi: 10.1038/s41418-020-00703-w
Kirisako, T. et al. A ubiquitin ligase complex assembles linear polyubiquitin chains. EMBO J. 25, 4877–4887 (2006).
pubmed: 17006537
pmcid: 1618115
doi: 10.1038/sj.emboj.7601360
Damgaard, R. B. et al. The deubiquitinase OTULIN is an essential negative regulator of inflammation and autoimmunity. Cell 166, 1215–1230 e1220 (2016).
pubmed: 27523608
pmcid: 5002269
doi: 10.1016/j.cell.2016.07.019
Hrdinka, M. & Gyrd-Hansen, M. The met1-linked ubiquitin machinery: emerging themes of (de)regulation. Mol. Cell 68, 265–280 (2017).
pubmed: 29053955
doi: 10.1016/j.molcel.2017.09.001
Jahan, A. S., Elbæk, C. R. & Damgaard, R. B. Met1-linked ubiquitin signalling in health and disease: inflammation, immunity, cancer, and beyond. Cell Death Differ. 28, 473–492 (2021).
pubmed: 33441937
pmcid: 7862443
doi: 10.1038/s41418-020-00676-w
Ikeda, F. et al. SHARPIN forms a linear ubiquitin ligase complex regulating NF-kappaB activity and apoptosis. Nature 471, 637–641 (2011).
pubmed: 21455181
pmcid: 3085511
doi: 10.1038/nature09814
Fuseya, Y. et al. The HOIL-1L ligase modulates immune signalling and cell death via monoubiquitination of LUBAC. Nat. cell Biol. 22, 663–673 (2020).
pubmed: 32393887
doi: 10.1038/s41556-020-0517-9
Fiil, B. K. et al. OTULIN restricts met1-linked ubiquitination to control innate immune signaling. Mol. Cell 50, 818–830 (2013).
pubmed: 23806334
pmcid: 4194427
doi: 10.1016/j.molcel.2013.06.004
Keusekotten, K. et al. OTULIN antagonizes LUBAC signaling by specifically hydrolyzing Met1-linked polyubiquitin. Cell 153, 1312–1326 (2013).
pubmed: 23746843
pmcid: 3690481
doi: 10.1016/j.cell.2013.05.014
Shibata, Y. et al. HTLV-1 tax induces formation of the active macromolecular ikk complex by generating lys63- and met1-linked hybrid polyubiquitin chains. PLoS Pathog. 13, e1006162 (2017).
pubmed: 28103322
pmcid: 5283754
doi: 10.1371/journal.ppat.1006162
Myoung, J. & Ganem, D. Generation of a doxycycline-inducible KSHV producer cell line of endothelial origin: maintenance of tight latency with efficient reactivation upon induction. J. Virol. Methods 174, 12–21 (2011).
pubmed: 21419799
pmcid: 3095772
doi: 10.1016/j.jviromet.2011.03.012
Takiuchi, T. et al. Suppression of LUBAC-mediated linear ubiquitination by a specific interaction between LUBAC and the deubiquitinases CYLD and OTULIN. Genes Cells 19, 254–272 (2014).
pubmed: 24461064
doi: 10.1111/gtc.12128
Guito, J. & Lukac, D. M. KSHV Rta promoter specification and viral reactivation. Front Microbiol 3, 30 (2012).
pubmed: 22347875
pmcid: 3278982
doi: 10.3389/fmicb.2012.00030
Tokunaga, F. et al. Involvement of linear polyubiquitylation of NEMO in NF-kappaB activation. Nat. cell Biol. 11, 123–132 (2009).
pubmed: 19136968
doi: 10.1038/ncb1821
Picchio, G. R. et al. The KSHV/HHV8-Infected BCBL-1 lymphoma line causes tumors in scid mice but fails to transmit virus to a human peripheral blood mononuclear cell graft. Virology 238, 22–29 (1997).
pubmed: 9375005
doi: 10.1006/viro.1997.8822
Nytko, K. J. et al. Vitamin C is dispensable for oxygen sensing in vivo. Blood 117, 5485–5493 (2011).
pubmed: 21346252
pmcid: 3109719
doi: 10.1182/blood-2010-09-307637
Stewart, M. Molecular mechanism of the nuclear protein import cycle. Nat. Rev. Mol. Cell Biol. 8, 195–208 (2007).
pubmed: 17287812
doi: 10.1038/nrm2114
Bu, W., Carroll, K. D., Palmeri, D. & Lukac, D. M. Kaposi’s sarcoma-associated herpesvirus/human herpesvirus 8 ORF50/Rta lytic switch protein functions as a tetramer. J. Virol. 81, 5788–5806 (2007).
pubmed: 17392367
pmcid: 1900300
doi: 10.1128/JVI.00140-07
Rivkin, E. et al. The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature 498, 318–324 (2013).
pubmed: 23708998
pmcid: 4931916
doi: 10.1038/nature12296
Fu, Y. et al. OTULIN allies with LUBAC to govern angiogenesis by editing ALK1 linear polyubiquitin. Mol. cell 81, 3187–3204.e3187 (2021).
pubmed: 34157307
doi: 10.1016/j.molcel.2021.05.031
Purushothaman, P., Uppal, T., Sarkar, R. & Verma, S. C. KSHV-mediated angiogenesis in tumor progression. Viruses 8, 198 (2016).
pubmed: 27447661
pmcid: 4974533
doi: 10.3390/v8070198
Schulz, T. F. & Cesarman, E. Kaposi Sarcoma-associated Herpesvirus: mechanisms of oncogenesis. Curr. Opin. Virol. 14, 116–128 (2015).
pubmed: 26431609
doi: 10.1016/j.coviro.2015.08.016
Dong, K. et al. HOIP modulates the stability of GPx4 by linear ubiquitination. Proc. Natl Acad. Sci. USA 119, e2214227119 (2022).
pubmed: 36279464
pmcid: 9636971
doi: 10.1073/pnas.2214227119
Emmerich, C. H. et al. Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains. Proc. Natl Acad. Sci. USA 110, 15247–15252 (2013).
pubmed: 23986494
pmcid: 3780889
doi: 10.1073/pnas.1314715110
Cao, L., Liu, X., Zheng, B., Xing, C. & Liu, J. Role of K63-linked ubiquitination in cancer. Cell death Discov. 8, 410 (2022).
pubmed: 36202787
pmcid: 9537175
doi: 10.1038/s41420-022-01204-0