SARS-CoV-2 Spike Protein Induces Time-Dependent CTSL Upregulation in HeLa Cells and Alveolarspheres.

SARS‐CoV‐2 cathepsin L cathepsins lysosomes spike protein

Journal

Journal of cellular biochemistry
ISSN: 1097-4644
Titre abrégé: J Cell Biochem
Pays: United States
ID NLM: 8205768

Informations de publication

Date de publication:
07 Jul 2024
Historique:
revised: 11 06 2024
received: 27 03 2024
accepted: 20 06 2024
medline: 7 7 2024
pubmed: 7 7 2024
entrez: 7 7 2024
Statut: aheadofprint

Résumé

Autophagy and lysosomal pathways are involved in the cell entry of SARS-CoV-2 virus. To infect the host cell, the spike protein of SARS-CoV-2 binds to the cell surface receptor angiotensin-converting enzyme 2 (ACE2). To allow the fusion of the viral envelope with the host cell membrane, the spike protein has to be cleaved. One possible mechanism is the endocytosis of the SARS-CoV-2-ACE2 complex and subsequent cleavage of the spike protein, mainly by the lysosomal protease cathepsin L. However, detailed molecular and dynamic insights into the role of cathepsin L in viral cell entry remain elusive. To address this, HeLa cells and iPSC-derived alveolarspheres were treated with recombinant SARS-CoV-2 spike protein, and the changes in mRNA and protein levels of cathepsins L, B, and D were monitored. Additionally, we studied the effect of cathepsin L deficiency on spike protein internalization and investigated the influence of the spike protein on cathepsin L promoters in vitro. Furthermore, we analyzed variants in the genes coding for cathepsin L, B, D, and ACE2 possibly associated with disease progression using data from Regeneron's COVID Results Browser and our own cohort of 173 patients with COVID-19, exhibiting a variant of ACE2 showing significant association with COVID-19 disease progression. Our in vitro studies revealed a significant increase in cathepsin L mRNA and protein levels following exposure to the SARS-CoV-2 spike protein in HeLa cells, accompanied by elevated mRNA levels of cathepsin B and D in alveolarspheres. Moreover, an increase in cathepsin L promoter activity was detected in vitro upon spike protein treatment. Notably, the knockout of cathepsin L resulted in reduced internalization of the spike protein. The study highlights the importance of cathepsin L and lysosomal proteases in the SARS-CoV-2 spike protein internalization and suggests the potential of lysosomal proteases as possible therapeutic targets against COVID-19 and other viral infections.

Identifiants

pubmed: 38971996
doi: 10.1002/jcb.30627
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e30627

Subventions

Organisme : Bayerisches Staatsministerium für Wissenschaft und Kunst
ID : COVID-19 research grant
Organisme : IZKF, Medical Faculty FAU University Erlangen-Nuremberg
ID : N8
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : 125440785
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : GRK2162
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : 270949263

Informations de copyright

© 2024 The Author(s). Journal of Cellular Biochemistry published by Wiley Periodicals LLC.

Références

I. Mellman, “Organelles Observed: Lysosomes,” Science (New York, NY) 244, no. 4906 (1989): 853–854.
C. Settembre, A. Fraldi, D. L. Medina, and A. Ballabio, “Signals from the Lysosome: A Control Centre for Cellular Clearance and Energy Metabolism,” Nature Reviews Molecular Cell Biology 14, no. 5 (2013): 283–296.
J. W. Coffey and C. de Duve, “Digestive Activity of Lysosomes,” Journal of Biological Chemistry 243, no. 12 (1968): 3255–3263.
A. M. Cuervo and J. F. Dice, “A Receptor for the Selective Uptake and Degradation of Proteins by Lysosomes,” Science 273, no. 5274 (1996): 501–503.
S. Ohkuma, and B. Poole, “Fluorescence Probe Measurement of the Intralysosomal pH in Living Cells and the Perturbation of pH by Various Agents,” Proceedings of the National Academy of Sciences of the United States of America 75, no. 7 (1978): 3327–3331.
P. Saftig and J. Klumperman, “Lysosome Biogenesis and Lysosomal Membrane Proteins: Trafficking Meets Function,” Nature Reviews Molecular Cell Biology 10, no. 9 (2009): 623–635.
I. Mellman, “Endocytosis and Molecular Sorting,” Annual Review of Cell and Developmental Biology 12 (1996): 575–625.
V. Stoka, V. Turk, and B. Turk, “Lysosomal Cathepsins and Their Regulation in Aging and Neurodegeneration,” Ageing Research Reviews 32 (2016): 22–37.
K. Chandran, N. J. Sullivan, U. Felbor, S. P. Whelan, and J. M. Cunningham, “Endosomal Proteolysis of the Ebola Virus Glycoprotein Is Necessary for Infection,” Science 308, no. 5728 (2005): 1643–1645.
G. Simmons, D. N. Gosalia, A. J. Rennekamp, J. D. Reeves, S. L. Diamond, and P. Bates, “Inhibitors of Cathepsin L Prevent Severe Acute Respiratory Syndrome Coronavirus Entry,” Proceedings of the National Academy of Sciences of the United States of America 102, no. 33 (2005): 11876–11881.
B. J. Bosch, W. Bartelink, and P. J. M. Rottier, “Cathepsin L Functionally Cleaves the Severe Acute Respiratory Syndrome Coronavirus Class I Fusion Protein Upstream of Rather Than Adjacent to the Fusion Peptide,” Journal of Virology 82, no. 17 (2008): 8887–8890.
D. H. Ebert, J. Deussing, C. Peters, and T. S. Dermody, “Cathepsin L and Cathepsin B Mediate Reovirus Disassembly in Murine Fibroblast Cells,” Journal of Biological Chemistry 277, no. 27 (2002): 24609–24617.
T. Ou, H. Mou, L. Zhang, A. Ojha, H. Choe, and M. Farzan, “Hydroxychloroquine‐Mediated Inhibition of SARS‐CoV‐2 Entry is Attenuated by TMPRSS2,” PLoS Pathogens 17, no. 1 (2021): e1009212, https://doi.org/10.1371/journal.ppat.1009212.
X. Ou, Y. Liu, X. Lei, et al., “Characterization of Spike Glycoprotein of SARS‐CoV‐2 on Virus Entry and Its Immune Cross‐Reactivity With SARS‐CoV,” Nature Communications 11 (2020): 1620.
G. Papa, D. L. Mallery, A. Albecka, et al., “Furin Cleavage of SARS‐CoV‐2 Spike Promotes but Is not Essential for Infection and Cell–Cell Fusion,” PLoS Pathogens 17, no. 1 (2021): e1009246.
F. Wu, S. Zhao, B. Yu, et al., “A New Coronavirus Associated With Human Respiratory Disease in China,” Nature 579, no. 7798 (2020): 265–269.
P. Zhou, X.‐L. Yang, X.‐G. Wang, et al., “A Pneumonia Outbreak Associated With a New Coronavirus of Probable Bat Origin,” Nature 579, no. 7798 (2020): 270–273, https://doi.org/10.1038/s41586-020-2012-7.
A. C. Walls, Y.‐J. Park, M. A. Tortorici, A. Wall, A. T. McGuire, and D. Veesler, “Structure, Function, and Antigenicity of the SARS‐CoV‐2 Spike Glycoprotein,” Cell 181, no. 2 (2020): 281–292.e6.
D. Wrapp, N. Wang, K. S. Corbett, et al., “Cryo‐EM Structure of the 2019‐nCoV Spike in the Prefusion Conformation,” Science 367, no. 6483 (2020): 1260–1263.
F. Scialo, A. Daniele, F. Amato, et al., “ACE2: The Major Cell Entry Receptor for SARS‐CoV‐2,” Lung 198, no. 6 (2020): 867–877.
J. Shang, G. Ye, K. Shi, et al., “Structural Basis of Receptor Recognition by SARS‐CoV‐2,” Nature 581, no. 7807 (2020): 221–224.
C. Burkard, M. H. Verheije, O. Wicht, et al., “Coronavirus Cell Entry Occurs Through the Endo‐/Lysosomal Pathway in a Proteolysis‐Dependent Manner,” PLoS Pathogens 10, no. 11 (2014): e1004502.
I. G. Madu, S. L. Roth, S. Belouzard, and G. R. Whittaker, “Characterization of a Highly Conserved Domain Within the Severe Acute Respiratory Syndrome Coronavirus Spike Protein S2 Domain With Characteristics of a Viral Fusion Peptide,” Journal of Virology 83, no. 15 (2009): 7411–7421.
M. Hoffmann, H. Kleine‐Weber, S. Schroeder, et al., “SARS‐CoV‐2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor,” Cell 181, no. 2 (2020): 271–280.e8.
J. Shang, Y. Wan, C. Luo, et al., “Cell Entry Mechanisms of SARS‐CoV‐2,” Proceedings of the National Academy of Sciences of the United States of America 117, no. 21 (2020): 11727–11734.
M.‐M. Zhao, W.‐L. Yang, F.‐Y. Yang, et al., “Cathepsin L Plays a Key Role in SARS‐CoV‐2 Infection in Humans and Humanized Mice and Is a Promising Target for New Drug Development,” Signal Transduction and Targeted Therapy 6, no. 1 (2021): 134.
S. Yu, X. Zheng, B. Zhou, et al., “SARS‐CoV‐2 Spike Engagement of ACE2 Primes S2′ Site Cleavage and Fusion Initiation,” Proceedings of the National Academy of Sciences of the United States of America 119, no. 1 (2022): e2111199119.
K. Bollavaram, T. H. Leeman, M. W. Lee, et al., “Multiple Sites on SARS‐CoV‐2 Spike Protein Are Susceptible to Proteolysis by Cathepsins B, K, L, S, and V,” Protein Science 30, no. 6 (2021): 1131–1143.
S. P. Smieszek, B. P. Przychodzen, and M. H. Polymeropoulos, “Amantadine Disrupts Lysosomal Gene Expression: A Hypothesis for COVID19 Treatment,” International Journal of Antimicrobial Agents 55, no. 6 (2020): 106004.
J. A. Kosmicki, J. E. Horowitz, N. Banerjee, et al., “Pan‐ancestry Exome-wide Association Analyses of COVID‐19 Outcomes in 586,157 Individuals,” American Journal of Human Genetics 108, no. 7 (2021): 1350–1355, https://doi.org/10.1016/j.ajhg.2021.05.017.
H. Shinoda, Y. Ma, R. Nakashima, K. Sakurai, T. Matsuda, and T. Nagai, “Acid‐Tolerant Monomeric GFP From Olindias formosa,” Cell Chemical Biology 25, no. 3 (2018): 330–338.e7, https://doi.org/10.1016/j.chembiol.2017.12.005.
A. Jacob, M. Vedaie, D. A. Roberts, et al., “Derivation of Self‐Renewing Lung Alveolar Epithelial Type II Cells From Human Pluripotent Stem Cells,” Nature Protocols 14, no. 12 (2019): 3303–3332.
S. Badawi, F. E. Mohamed, N. R. Alkhofash, A. John, A. Ali, and B. R. Ali, “Characterization of ACE2 Naturally Occurring Missense Variants: Impact on Subcellular Localization and Trafficking,” Human Genomics 16, no. 1 (2022): 35.
A. Drobny, S. Prieto Huarcaya, J. Dobert, et al., “The Role of Lysosomal Cathepsins in Neurodegeneration: Mechanistic Insights, Diagnostic Potential and Therapeutic Approaches,” Biochimica et Biophysica Acta (BBA)—Molecular Cell Research 1869, no. 7 (2022): 119243.
C. B. Jackson, M. Farzan, B. Chen, and H. Choe, “Mechanisms of SARS‐CoV‐2 Entry Into Cells,” Nature Reviews Molecular Cell Biology 23, no. 1 (2022): 3–20, https://doi.org/10.1038/s41580-021-00418-x.
C. Muus, M. D. Luecken, G. Eraslan, et al. “Integrated Analyses of Single‐Cell Atlases Reveal Age, Gender, and Smoking Status Associations With Cell Type‐Specific Expression of Mediators of SARS‐CoV‐2 Viral Entry and Highlights Inflammatory Programs in Putative Target Cells,” bioRXiv (2020), https://doi.org/10.1101/2020.04.19.049254.
C. Shang, X. Zhuang, H. Zhang, et al., “Inhibitors of Endosomal Acidification Suppress SARS‐CoV‐2 Replication and Relieve Viral Pneumonia in hACE2 Transgenic Mice,” Virology Journal 18, no. 1 (2021): 46.
C. P. Gomes, D. E. Fernandes, F. Casimiro, et al., “Cathepsin L in COVID‐19: From Pharmacological Evidences to Genetics,” Frontiers in Cellular and Infection Microbiology 10 (2020): 589505.
L. Guruprasad, “Human SARS CoV‐2 Spike Protein Mutations,” Proteins: Structure, Function, and Bioinformatics 89, no. 5 (2021): 569–576.
Q. Li, J. Wu, J. Nie, et al., “The Impact of Mutations in SARS‐CoV‐2 Spike on Viral Infectivity and Antigenicity,” Cell 182, no. 5 (2020): 1284–1294.e9.
B. Lubinski, M. H. V. Fernandes, L. Frazier, et al., “Functional Evaluation of the P681H Mutation on the Proteolytic Activation of the SARS‐CoV‐2 Variant B.1.1.7 (Alpha) Spike,” iScience 25, no. 1 (2022): 103589.
E. Socher, M. Conrad, L. Heger, et al., “Computational Decomposition Reveals Reshaping of the SARS‐CoV‐2‐ACE2 Interface Among Viral Variants Expressing the N501Y Mutation,” Journal of Cellular Biochemistry 122, no. 12 (2021): 1863–1872.
E. Socher, M. Conrad, L. Heger, et al., “Mutations in the B.1.1.7 SARS‐CoV‐2 Spike Protein Reduce Receptor‐Binding Affinity and Induce a Flexible Link to the Fusion Peptide,” Biomedicines 9, no. 5 (2021): 525.
S. Zhang, E. P. Go, H. Ding, et al., “Analysis of Glycosylation and Disulfide Bonding of Wild‐Type SARS‐CoV‐2 Spike Glycoprotein,” Journal of Virology 96, no. 3 (2022): e0162621.
A. Escalera, A. S. Gonzalez‐Reiche, S. Aslam, et al., “Mutations in SARS‐CoV‐2 Variants of Concern Link to Increased Spike Cleavage and Virus Transmission,” Cell Host & Microbe 30, no. 3 (2022): 373–387.e7.
F. Gao, X. Wang, N. Qin, et al., “The Analysis of Cathepsin L That Mediates Cellular SARS‐CoV‐2 Infection Leading to COVID‐19 in Head and Neck Squamous Cell Carcinoma,” Frontiers in Immunology 14 (2023): 1156038.
F. Chen, Y. Zhang, X. Li, W. Li, X. Liu, and X. Xue, “The Impact of ACE2 Polymorphisms on COVID‐19 Disease: Susceptibility, Severity, and Therapy,” Frontiers in Cellular and Infection Microbiology 11 (2021): 753721, https://doi.org/10.3389/fcimb.2021.753721.
L. E. Martínez‐Gómez, B. Herrera‐López, C. Martinez‐Armenta, et al., “ACE and ACE2 Gene Variants Are Associated With Severe Outcomes of COVID‐19 in Men,” Frontiers in Immunology 13 (2022): 812940.
W. Ren, Y. Zhu, J. Lan, et al., “Susceptibilities of Human ACE2 Genetic Variants in Coronavirus Infection,” Journal of Virology 96, no. 1 (2022): e0149221.
B. Coutard, C. Valle, X. de Lamballerie, B. Canard, N. G. Seidah, and E. Decroly, “The Spike Glycoprotein of the New Coronavirus 2019‐nCoV Contains a Furin‐Like Cleavage Site Absent in CoV of the Same Clade,” Antiviral Research 176 (2020): 104742.
J. K. Millet and G. R. Whittaker, “Host Cell Proteases: Critical Determinants of Coronavirus Tropism and Pathogenesis,” Virus Research 202 (2015): 120–134.
A. Jacob, M. Morley, F. Hawkins, et al., “Differentiation of Human Pluripotent Stem Cells Into Functional Lung Alveolar Epithelial Cells,” Cell Stem Cell 21, no. 4 (2017): 472–488.e10.
M. Kawase, K. Shirato, L. van der Hoek, F. Taguchi, and S. Matsuyama, “Simultaneous Treatment of Human Bronchial Epithelial Cells With Serine and Cysteine Protease Inhibitors Prevents Severe Acute Respiratory Syndrome Coronavirus Entry,” Journal of Virology 86, no. 12 (2012): 6537–6545.
P. Padmanabhan, R. Desikan, and N. M. Dixit, “Targeting TMPRSS2 and Cathepsin B/L Together May Be Synergistic Against SARS‐CoV‐2 Infection,” PLoS Computational Biology 16, no. 12 (2020): e1008461.
A. Yoshimura, K. Kuroda, K. Kawasaki, S. Yamashina, T. Maeda, and S. I. Ohnishi, “Infectious Cell Entry Mechanism of Influenza Virus,” Journal of Virology 43, no. 1 (1982): 284–293.
H. Zeichhardt, K. Wetz, P. Willingmann, and K. O. Habermehl, “Entry of Poliovirus Type 1 and Mouse Elberfeld (ME) Virus Into HEp‐2 Cells: Receptor‐Mediated Endocytosis and Endosomal or Lysosomal Uncoating,” Journal of General Virology 66, pt. 3 (1985): 483–492.

Auteurs

Magdalena M Bolsinger (MM)

Department of Molecular Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Alice Drobny (A)

Department of Molecular Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Sibylle Wilfling (S)

Center for Human Genetics Regensburg, Regensburg, Germany.

Stephanie Reischl (S)

Department of Stem Cell Biology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Florian Krach (F)

Department of Stem Cell Biology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Raul Moritz (R)

Department of Molecular Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Denise Balta (D)

Department of Molecular Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Ute Hehr (U)

Center for Human Genetics Regensburg, Regensburg, Germany.

Elisabeth Sock (E)

Institut für Biochemie, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Florian Bleibaum (F)

Institute of Biochemistry, Christian-Albrechts-University Kiel, Kiel, Germany.

Frank Hanses (F)

Emergency Department, University Hospital Regensburg, Regensburg, Germany.
Department for Infection Control and Infectious Diseases, University Hospital Regensburg, Regensburg, Germany.

Beate Winner (B)

Department of Stem Cell Biology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Susy Prieto Huarcaya (SP)

Department of Molecular Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Philipp Arnold (P)

Institute of Anatomy, Functional and Clinical Anatomy, Friedrich-Alexander-University Erlangen-Nürnberg (FAU), Erlangen, Germany.

Friederike Zunke (F)

Department of Molecular Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

Classifications MeSH