High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage.

chemical space chromatography environmental exposures exposome high-resolution mass spectrometry metabolomics non-targeted analysis toxicants

Journal

Environmental science & technology
ISSN: 1520-5851
Titre abrégé: Environ Sci Technol
Pays: United States
ID NLM: 0213155

Informations de publication

Date de publication:
10 Jul 2024
Historique:
medline: 10 7 2024
pubmed: 10 7 2024
entrez: 10 7 2024
Statut: aheadofprint

Résumé

In the modern "omics" era, measurement of the human exposome is a critical missing link between genetic drivers and disease outcomes. High-resolution mass spectrometry (HRMS), routinely used in proteomics and metabolomics, has emerged as a leading technology to broadly profile chemical exposure agents and related biomolecules for accurate mass measurement, high sensitivity, rapid data acquisition, and increased resolution of chemical space. Non-targeted approaches are increasingly accessible, supporting a shift from conventional hypothesis-driven, quantitation-centric targeted analyses toward data-driven, hypothesis-generating chemical exposome-wide profiling. However, HRMS-based exposomics encounters unique challenges. New analytical and computational infrastructures are needed to expand the analysis coverage through streamlined, scalable, and harmonized workflows and data pipelines that permit longitudinal chemical exposome tracking, retrospective validation, and multi-omics integration for meaningful health-oriented inferences. In this article, we survey the literature on state-of-the-art HRMS-based technologies, review current analytical workflows and informatic pipelines, and provide an up-to-date reference on exposomic approaches for chemists, toxicologists, epidemiologists, care providers, and stakeholders in health sciences and medicine. We propose efforts to benchmark fit-for-purpose platforms for expanding coverage of chemical space, including gas/liquid chromatography-HRMS (GC-HRMS and LC-HRMS), and discuss opportunities, challenges, and strategies to advance the burgeoning field of the exposome.

Identifiants

pubmed: 38984754
doi: 10.1021/acs.est.4c01156
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Auteurs

Yunjia Lai (Y)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York 10032, United States.

Jeremy P Koelmel (JP)

Department of Environmental Health Sciences, Yale School of Public Health, New Haven, Connecticut 06520, United States.

Douglas I Walker (DI)

Gangarosa Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, Georgia 30322, United States.

Elliott J Price (EJ)

RECETOX, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.

Stefano Papazian (S)

Department of Environmental Science, Science for Life Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden.
National Facility for Exposomics, Metabolomics Platform, Science for Life Laboratory, Stockholm University, Solna 171 65, Sweden.

Katherine E Manz (KE)

Department of Environmental Health Sciences, School of Public Health, University of Michigan, Ann Arbor, Michigan 48109, United States.

Delia Castilla-Fernández (D)

Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna, 1010 Vienna, Austria.

John A Bowden (JA)

Center for Environmental and Human Toxicology, Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, Florida 32611, United States.

Vladimir Nikiforov (V)

NILU, Fram Centre, Tromsø NO-9296, Norway.

Arthur David (A)

Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S, 1085 Rennes, France.

Vincent Bessonneau (V)

Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S, 1085 Rennes, France.

Bashar Amer (B)

Thermo Fisher Scientific, San Jose, California 95134, United States.

Suresh Seethapathy (S)

Thermo Fisher Scientific, Somerset, New Jersey 08873, United States.

Xin Hu (X)

Gangarosa Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, Georgia 30322, United States.

Elizabeth Z Lin (EZ)

Department of Environmental Health Sciences, Yale School of Public Health, New Haven, Connecticut 06520, United States.

Akrem Jbebli (A)

RECETOX, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.

Brooklynn R McNeil (BR)

Biomarkers Core Laboratory, Irving Institute for Clinical and Translational Research, Columbia University Irving Medical Center, New York, New York 10032, United States.

Dinesh Barupal (D)

Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, New York 10029, United States.

Marina Cerasa (M)

Institute of Atmospheric Pollution Research, Italian National Research Council, 00015 Monterotondo, Rome, Italy.

Hongyu Xie (H)

Department of Environmental Science, Science for Life Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden.

Vrinda Kalia (V)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York 10032, United States.

Renu Nandakumar (R)

Biomarkers Core Laboratory, Irving Institute for Clinical and Translational Research, Columbia University Irving Medical Center, New York, New York 10032, United States.

Randolph Singh (R)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York 10032, United States.

Zhenyu Tian (Z)

Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States.

Peng Gao (P)

Department of Environmental and Occupational Health, and Department of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, United States.
UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania 15232, United States.

Yujia Zhao (Y)

Institute for Risk Assessment Sciences, Utrecht University, Utrecht 3584CM, The Netherlands.

Jean Froment (J)

NILU, PO Box 100, NO-2027 Kjeller, Norway.

Pawel Rostkowski (P)

NILU, PO Box 100, NO-2027 Kjeller, Norway.

Saurabh Dubey (S)

Biomarkers Core Laboratory, Irving Institute for Clinical and Translational Research, Columbia University Irving Medical Center, New York, New York 10032, United States.

Kateřina Coufalíková (K)

RECETOX, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.

Hana Seličová (H)

RECETOX, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.

Helge Hecht (H)

RECETOX, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.

Sheng Liu (S)

Department of Environmental Health Sciences, Yale School of Public Health, New Haven, Connecticut 06520, United States.

Hanisha H Udhani (HH)

Biomarkers Core Laboratory, Irving Institute for Clinical and Translational Research, Columbia University Irving Medical Center, New York, New York 10032, United States.

Sophie Restituito (S)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York 10032, United States.

Kam-Meng Tchou-Wong (KM)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York 10032, United States.

Kun Lu (K)

Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.

Jonathan W Martin (JW)

Department of Environmental Science, Science for Life Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden.
National Facility for Exposomics, Metabolomics Platform, Science for Life Laboratory, Stockholm University, Solna 171 65, Sweden.

Benedikt Warth (B)

Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna, 1010 Vienna, Austria.

Krystal J Godri Pollitt (KJ)

Department of Environmental Health Sciences, Yale School of Public Health, New Haven, Connecticut 06520, United States.

Jana Klánová (J)

RECETOX, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.

Oliver Fiehn (O)

West Coast Metabolomics Center, University of California-Davis, Davis, California 95616, United States.

Thomas O Metz (TO)

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.

Kurt D Pennell (KD)

School of Engineering, Brown University, Providence, Rhode Island 02912, United States.

Dean P Jones (DP)

Department of Medicine, School of Medicine, Emory University, Atlanta, Georgia 30322, United States.

Gary W Miller (GW)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York 10032, United States.

Classifications MeSH