HOFE: an interactive forensic entomological database.


Journal

Database : the journal of biological databases and curation
ISSN: 1758-0463
Titre abrégé: Database (Oxford)
Pays: England
ID NLM: 101517697

Informations de publication

Date de publication:
13 Jul 2024
Historique:
received: 14 11 2023
revised: 06 05 2024
accepted: 17 06 2024
medline: 13 7 2024
pubmed: 13 7 2024
entrez: 13 7 2024
Statut: ppublish

Résumé

The significance of entomological evidence in inferring the time, location and cause of death has been demonstrated both theoretically and practically. With the advancement of sequencing technologies, reports have emerged on necrophagous insects' nuclear genomes, transcriptomes, proteomes and mitochondrial genomes. However, within the field of forensic entomology, there is currently no available database that can integrate, store and share the resources of necrophagous insects. The absence of a database poses an inconvenience to the application of entomological evidence in judicial practice and hampers the development of the forensic entomology discipline. Given this, we have developed the Home Of Forensic Entomology database, encompassing 10 core functional modules: Home, Browse, Mitochondria, Proteome, JBrowse, Search, BLAST, Tools, Case base and Maps. Notably, the 'Tools' module enables multiple sequence alignment analysis (Muscle), homologous protein prediction (Genewise), primer design (Primer), large-scale genomic analysis (Lastz), Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis, as well as expression profiling (PCA Analysis, Hcluster and Correlation Heatmap). In addition, the present database also works as an interactive platform for researchers by sharing forensic entomological case reports and uploading data and material. This database provides potential visitors with a comprehensive function for multi-omics data analysis, offers substantial references to researchers and criminal scene investigators and facilitates the utilization of entomological evidence in court. Database URL: http://ihofe.com/.

Identifiants

pubmed: 39001614
pii: 7713063
doi: 10.1093/database/baae058
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Research and Innovation Team Project, Xinjiang Medical University
ID : XYD2024C05
Organisme : National Natural Science Foundation of China
ID : 32370554 81901923
Organisme : Science Foundation of Hunan Province
ID : 2022JJ30693
Organisme : Research and Innovation Team Project, Xinjiang Medical University
ID : XYD2024C05
Organisme : National Natural Science Foundation of China
ID : 32370554 81901923
Organisme : Science Foundation of Hunan Province
ID : 2022JJ30693

Informations de copyright

© The Author(s) 2024. Published by Oxford University Press.

Auteurs

Mandie Liu (M)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.

Yihong Qu (Y)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.

Yifei Luo (Y)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.

Binta J J Jallow (BJJ)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.

Yuting Ma (Y)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.

Afito Luciano (A)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.

Jingjing Huang (J)

Department of Forensic Medicine, Key Laboratory of Forensic Medicine, School of Basic Medical Sciences, Xinjiang Medical University, Urumqi, Xinjiang 830017, China.
Xinjiang Key Laboratory of Molecular Biology for Endemic Diseases, Urumqi, Xinjiang 830017, China.

Jifeng Cai (J)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.
Department of Forensic Medicine, Key Laboratory of Forensic Medicine, School of Basic Medical Sciences, Xinjiang Medical University, Urumqi, Xinjiang 830017, China.
Xinjiang Key Laboratory of Molecular Biology for Endemic Diseases, Urumqi, Xinjiang 830017, China.

Fanming Meng (F)

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.
Department of Forensic Medicine, Key Laboratory of Forensic Medicine, School of Basic Medical Sciences, Xinjiang Medical University, Urumqi, Xinjiang 830017, China.
Xinjiang Key Laboratory of Molecular Biology for Endemic Diseases, Urumqi, Xinjiang 830017, China.

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