Spectroscopically validated pH-dependent MSOX movies provide detailed mechanism of copper nitrite reductases.

Denitrification PCET catalysis electron transfer metalloproteins proton transfer substrate utilisation

Journal

Journal of molecular biology
ISSN: 1089-8638
Titre abrégé: J Mol Biol
Pays: Netherlands
ID NLM: 2985088R

Informations de publication

Date de publication:
11 Jul 2024
Historique:
received: 17 05 2024
revised: 08 07 2024
accepted: 09 07 2024
medline: 14 7 2024
pubmed: 14 7 2024
entrez: 13 7 2024
Statut: aheadofprint

Résumé

Copper nitrite reductases (CuNiRs) exhibit a strong pH dependence of their catalytic activity. Structural movies can be obtained by serially recording multiple structures (frames) from the same spot of a crystal using the MSOX serial crystallography approach. This method has been combined with on-line single crystal optical spectroscopy to capture the pH-dependent structural changes that accompany during turnover of CuNiRs from two Rhizobia species. The structural movies, initiated by the redox activation of a type-1 copper site (T1Cu) via X-ray generated photoelectrons, have been obtained for the substrate-free and substrate-bound states at low (high enzymatic activity) and high (low enzymatic activity) pH. At low pH, formation of the product nitric oxide (NO) is complete at the catalytic type-2 copper site (T2Cu) after a dose of 3 MGy (frame 5) with full bleaching of the T1Cu ligand-to-metal charge transfer (LMCT) 455 nm band (S(σ)

Identifiants

pubmed: 39002715
pii: S0022-2836(24)00315-2
doi: 10.1016/j.jmb.2024.168706
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

168706

Informations de copyright

Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Samuel L Rose (SL)

Molecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, L69 7ZB, United Kingdom.

Felix Martín Ferroni (F)

Molecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, L69 7ZB, United Kingdom; Departamento de Física, Facultad de Bioquímica y Ciencias Biológicas. Universidad Nacional del Litoral (UNL). CONICET, Ciudad Universitaria. Paraje El Pozo, Santa Fe, Argentina. Electronic address: fferroni@fbcb.unl.edu.ar.

Sam Horrell (S)

Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.

Carlos Dante Brondino (C)

Departamento de Física, Facultad de Bioquímica y Ciencias Biológicas. Universidad Nacional del Litoral (UNL). CONICET, Ciudad Universitaria. Paraje El Pozo, Santa Fe, Argentina.

Robert R Eady (RR)

Molecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, L69 7ZB, United Kingdom.

Sofia Jaho (S)

Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.

Michael A Hough (MA)

Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.

Robin L Owen (RL)

Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.

Svetlana V Antonyuk (SV)

Molecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, L69 7ZB, United Kingdom. Electronic address: S.Antonyuk@liverpool.ac.uk.

S Samar Hasnain (S)

Molecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, L69 7ZB, United Kingdom. Electronic address: s.s.hasnain@liverpool.ac.uk.

Classifications MeSH