Association of clonal hematopoiesis and mosaic chromosomal alterations with solid malignancy incidence and mortality.

breast cancer clonal hematopoiesis clonal hematopoiesis of indeterminate potential (CHIP) colorectal cancer mosaic chromosomal alterations solid tumor mortality solid tumors risk

Journal

Cancer
ISSN: 1097-0142
Titre abrégé: Cancer
Pays: United States
ID NLM: 0374236

Informations de publication

Date de publication:
16 Jul 2024
Historique:
revised: 20 05 2024
received: 07 12 2023
accepted: 28 05 2024
medline: 16 7 2024
pubmed: 16 7 2024
entrez: 16 7 2024
Statut: aheadofprint

Résumé

Understanding the impact of clonal hematopoiesis of indeterminate potential (CHIP) and mosaic chromosomal alterations (mCAs) on solid tumor risk and mortality can shed light on novel cancer pathways. The authors analyzed whole genome sequencing data from the Trans-Omics for Precision Medicine Women's Health Initiative study (n = 10,866). They investigated the presence of CHIP and mCA and their association with the development and mortality of breast, lung, and colorectal cancers. CHIP was associated with higher risk of breast (hazard ratio [HR], 1.30; 95% confidence interval [CI], 1.03-1.64; p = .02) but not colorectal (p = .77) or lung cancer (p = .32). CHIP carriers who developed colorectal cancer also had a greater risk for advanced-stage (p = .01), but this was not seen in breast or lung cancer. CHIP was associated with increased colorectal cancer mortality both with (HR, 3.99; 95% CI, 2.41-6.62; p < .001) and without adjustment (HR, 2.50; 95% CI, 1.32-4.72; p = .004) for advanced-stage and a borderline higher breast cancer mortality (HR, 1.53; 95% CI, 0.98-2.41; p = .06). Conversely, mCA (cell fraction [CF] >3%) did not correlate with cancer risk. With higher CFs (mCA >5%), autosomal mCA was associated with increased breast cancer risk (HR, 1.39; 95% CI, 1.06-1.83; p = .01). There was no association of mCA (>3%) with breast, colorectal, or lung mortality except higher colon cancer mortality (HR, 2.19; 95% CI, 1.11-4.3; p = .02) with mCA >5%. CHIP and mCA (CF >5%) were associated with higher breast cancer risk and colorectal cancer mortality individually. These data could inform on novel pathways that impact cancer risk and lead to better risk stratification.

Sections du résumé

BACKGROUND BACKGROUND
Understanding the impact of clonal hematopoiesis of indeterminate potential (CHIP) and mosaic chromosomal alterations (mCAs) on solid tumor risk and mortality can shed light on novel cancer pathways.
METHODS METHODS
The authors analyzed whole genome sequencing data from the Trans-Omics for Precision Medicine Women's Health Initiative study (n = 10,866). They investigated the presence of CHIP and mCA and their association with the development and mortality of breast, lung, and colorectal cancers.
RESULTS RESULTS
CHIP was associated with higher risk of breast (hazard ratio [HR], 1.30; 95% confidence interval [CI], 1.03-1.64; p = .02) but not colorectal (p = .77) or lung cancer (p = .32). CHIP carriers who developed colorectal cancer also had a greater risk for advanced-stage (p = .01), but this was not seen in breast or lung cancer. CHIP was associated with increased colorectal cancer mortality both with (HR, 3.99; 95% CI, 2.41-6.62; p < .001) and without adjustment (HR, 2.50; 95% CI, 1.32-4.72; p = .004) for advanced-stage and a borderline higher breast cancer mortality (HR, 1.53; 95% CI, 0.98-2.41; p = .06). Conversely, mCA (cell fraction [CF] >3%) did not correlate with cancer risk. With higher CFs (mCA >5%), autosomal mCA was associated with increased breast cancer risk (HR, 1.39; 95% CI, 1.06-1.83; p = .01). There was no association of mCA (>3%) with breast, colorectal, or lung mortality except higher colon cancer mortality (HR, 2.19; 95% CI, 1.11-4.3; p = .02) with mCA >5%.
CONCLUSIONS CONCLUSIONS
CHIP and mCA (CF >5%) were associated with higher breast cancer risk and colorectal cancer mortality individually. These data could inform on novel pathways that impact cancer risk and lead to better risk stratification.

Identifiants

pubmed: 39012906
doi: 10.1002/cncr.35455
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NCI NIH HHS
ID : 1 R01 CA248747-01A1
Pays : United States

Informations de copyright

© 2024 American Cancer Society.

Références

Jaiswal S, Fontanillas P, Flannick J, et al. Age‐related clonal hematopoiesis associated with adverse outcomes. N Engl J Med. 2014;371(26):2488‐2498. doi:10.1056/nejmoa1408617
Genovese G, Kahler AK, Handsaker RE, et al. Clonal hematopoiesis and blood‐cancer risk inferred from blood DNA sequence. N Engl J Med. 2014;371(26):2477‐2487. doi:10.1056/nejmoa1409405
Xie M, Lu C, Wang J, et al. Age‐related mutations associated with clonal hematopoietic expansion and malignancies. Nat Med. 2014;20(12):1472‐1478. doi:10.1038/nm.3733
Young AL, Challen GA, Birmann BM, Druley TE. Clonal haematopoiesis harbouring AML‐associated mutations is ubiquitous in healthy adults. Nat Commun. 2016;7(1):12484. doi:10.1038/ncomms12484
McKerrell T, Park N, Moreno T, et al. Leukemia‐associated somatic mutations drive distinct patterns of age‐related clonal hemopoiesis. Cell Rep. 2015;10(8):1239‐1245. doi:10.1016/j.celrep.2015.02.005
Jaiswal S, Natarajan P, Silver AJ, et al. Clonal hematopoiesis and risk of atherosclerotic cardiovascular disease. N Engl J Med. 2017;377(2):111‐121. doi:10.1056/nejmoa1701719
Haring B, Reiner AP, Liu J, et al. Healthy lifestyle and clonal hematopoiesis of indeterminate potential: results from the Women's Health Initiative. J Am Heart Assoc. 2021;10(5):e018789. doi:10.1161/jaha.120.018789
Bick AG, Weinstock JS, Nandakumar SK, et al. Inherited causes of clonal haematopoiesis in 97,691 whole genomes. Nature. 2020;586(7831):763‐768. doi:10.1038/s41586‐020‐2819‐2
Fairchild L, Whalen J, D’Aco K, et al. Clonal hematopoiesis detection in cancer patients using cell free DNA sequencing. bioRxiv. Preprint posted online October 29, 2021doi: 10.27.466159
Comen EA, Bowman RL, Selenica P, et al. Evaluating clonal hematopoiesis in tumor‐infiltrating leukocytes in breast cancer and secondary hematologic malignancies. J Natl Cancer Inst. 2020;112(1):107‐110. doi:10.1093/jnci/djz157
Yang FRN, Robinson T, Bowman RL, et al. Dnmt3a mutations in the hematopoietic system promote colitis‐associated colon cancer: a model of clonal hematopoiesis in solid tumors. Blood. 2021;138(suppl 1):2161. doi:10.1182/blood‐2021‐149740
Christopher Maximilian Arends SD, Stahler A, Hablesreiter R, et al. Clonal hematopoiesis is associated with improved survival in patients with metastatic colorectal cancer from the FIRE‐3 trial. Blood. 2022;139(10):1593‐1597. doi:10.1182/blood.2021014108
Kessler MD, Damask A, O’Keeffe S, et al. Exome sequencing of 628,388 individuals identifies common and rare variant associations with clonal hematopoiesis phenotypes. medRxiv. Preprint posted online January 01, 2022. doi:10.1101/2021.12.29.21268342
Tian R, Wiley B, Liu J, et al. Clonal hematopoiesis and risk of incident lung cancer. J Clin Oncol. 2023:41(7):1423‐1433.
Qin N, Chen C, Yang L, et al. Interplay between mosaic chromosomal alterations and polygenic risk score increases risk of non‐small cell lung cancer. medRxiv. Preprint posted online April 18, 2022. doi: 10.1101/2022.04.13.22273440
Loftfield E, Zhou W, Yeager M, Chanock SJ, Freedman ND, Machiela MJ. Mosaic Y loss is moderately associated with solid tumor risk. Cancer Res. 2019;79(3):461‐466. doi:10.1158/0008‐5472.can‐18‐2566
Saiki R, Momozawa Y, Nannya Y, et al. Combined landscape of single‐nucleotide variants and copy number alterations in clonal hematopoiesis. Nat Med. 2021;27(7):1239‐1249. doi:10.1038/s41591‐021‐01411‐9
Xie M, Lu C, Wang J, et al. Age‐related mutations associated with clonal hematopoietic expansion and malignancies. Nat Med. 2014;20(12):1472‐1478. doi:10.1038/nm.3733
Desai P, Mencia‐Trinchant N, Savenkov O, et al. Somatic mutations precede acute myeloid leukemia years before diagnosis. Nat Med. 2018;24(7):1015‐1023. doi:10.1038/s41591‐018‐0081‐z
Abelson S, Collord G, Ng SWK, et al. Prediction of acute myeloid leukaemia risk in healthy individuals. Nature. 2018;559(7714):400‐404. doi:10.1038/s41586‐018‐0317‐6
Young AL, Challen GA, Birmann BM, Druley TE. Clonal haematopoiesis harbouring AML‐associated mutations is ubiquitous in healthy adults. Nat Commun. 2016;7(1):12484. doi:10.1038/ncomms12484
Coombs CC, Zehir A, Devlin SM, et al. Therapy‐related clonal hematopoiesis in patients with non‐hematologic cancers is common and associated with adverse clinical outcomes. Cell Stem Cell. 2017;21(3):374‐382. doi:10.1016/j.stem.2017.07.010
Kessler MD, Damask A, O'Keeffe S, et al. Common and rare variant associations with clonal haematopoiesis phenotypes. Nature. 2022;612(7939):301‐309. doi:10.1038/s41586‐022‐05448‐9
Feng Y, Yuan Q, Newsome RC, et al. Hematopoietic‐specific heterozygous loss of Dnmt3a exacerbates colitis‐associated colon cancer. J Exp Med. 2023;220(11):e20230011. doi:10.1084/jem.20230011
Machiela MJ, Zhou W, Caporaso N, et al. Mosaic 13q14 deletions in peripheral leukocytes of non‐hematologic cancer cases and healthy controls. J Hum Genet. 2016;61(5):411‐418. doi:10.1038/jhg.2015.166
Honma Y, Hozumi M, Abe E, et al. 1 alpha,25‐Dihydroxyvitamin D3 and 1 alpha‐hydroxyvitamin D3 prolong survival time of mice inoculated with myeloid leukemia cells. Proc Natl Acad Sci U S A. 1983;80(1):201‐204. doi:10.1073/pnas.80.1.201
Design of the Women's Health Initiative clinical trial and observational study. The Women's Health Initiative Study Group. Control Clin Trials. 1998;19(1):61‐109.
Anderson GL, Manson J, Wallace R, et al. Implementation of the women's health initiative study design. Ann Epidemiol. 2003;13(9):S5‐S17. doi:10.1016/s1047‐2797(03)00043‐7
TOPMED program. Accessed January 7, 2024. https://www.nhlbi.nih.gov/science/trans‐omics‐precision‐medicine‐topmed‐program
Brody JA, Morrison A, Bis JC, et al. Abstract P093: analysis commons: team science in a big‐data environment for genetic epidemiology. Circulation. 2017;135(suppl 1). doi:10.1161/circ.135.suppl_1.p093
Raffield LM, Ulirsch JC, Naik RP, et al. Common α‐globin variants modify hematologic and other clinical phenotypes in sickle cell trait and disease. PLoS Genet. 2018;14(3):e1007293. doi:10.1371/journal.pgen.1007293
Raffield LM, Zakai NA, Duan Q, et al. D‐dimer in African Americans: whole genome sequence analysis and relationship to cardiovascular disease risk in the Jackson Heart Study. Arterioscler Thromb Vasc Biol. 2017;37(11):2220‐2227. doi:10.1161/atvbaha.117.310073
Loh PR, Genovese G, Handsaker RE, et al. Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations. Nature. 2018;559(7714):350‐355. doi:10.1038/s41586‐018‐0321‐x
Loh PR, Genovese G, McCarroll SA. Monogenic and polygenic inheritance become instruments for clonal selection. Nature. 2020;584(7819):136‐141. doi:10.1038/s41586‐020‐2430‐6
Jakubek YA, Zhou Y, Stilp A, et al. Mosaic chromosomal alterations in blood across ancestries using whole‐genome sequencing. Nat Genet. 2023;55(11):1912‐1919. doi:10.1038/s41588‐023‐01553‐1
Taliun D, Harris DN, Kessler MD, et al. Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature. 2021;590(7845):290‐299. doi:10.1038/s41586‐021‐03205‐y

Auteurs

Pinkal Desai (P)

Department of Hematology/Oncology, Weill Cornell Medical School, New York, New York, USA.

Ying Zhou (Y)

Department of Data Sciences, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.

Justin Grenet (J)

Oregon Health and Science University, Portland, USA.

Samuel K Handelman (SK)

Division of Gastroenterology and Hepatology, Department of Internal Medicine, Michigan Medicine at the University of Michigan, Ann Arbor, Michigan, USA.

Cynthia M Crispino (CM)

Department of Hematology/Oncology, Weill Cornell Medical School, New York, New York, USA.

Laura N Tarbay (LN)

Department of Hematology/Oncology, Weill Cornell Medical School, New York, New York, USA.

Eric A Whitsel (EA)

Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, North Carolina, USA.
Department of Medicine, School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.

Gail Roboz (G)

Department of Hematology/Oncology, Weill Cornell Medical School, New York, New York, USA.

Ana Barac (A)

CardioOncology Program, Inova Health System, Fairfax, Virginia, USA.

Michael Honigberg (M)

Cardiology Division, Massachusetts General Hospital, Boston, Massachusetts, USA.
Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

Alexander Bick (A)

Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA.

Garnet Anderson (G)

Fred Hutchinson Cancer Research Center, University of Washington, Seattle, Washington, USA.

Jean Wactawski-Wende (J)

Department of Epidemiology and Environmental Health, University at Buffalo, Buffalo, New York, USA.

Yasminka A Jakubek Swartzlander (YA)

Department of Internal Medicine, College of Medicine, University of Kentucky, Lexington, Kentucky, USA.

Jason Bacon (J)

Acadix Consulting, Milwaukee, Wisconsin, USA.

Justin Wong (J)

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Xiaolong Ma (X)

Division of Biostatistics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.

Paul Scheet (P)

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Zichan Li (Z)

Computational Biology and Bioinformatics, Englander Institute for Precision Medicine, Weill Cornell Medical School, New York, New York, USA.

Pashtoon Kasi (P)

Weill Cornell Medicine, Englander Institute of Precision Medicine, New York Presbyterian Hospital, New York, New York, USA.

Ross Prentice (R)

Fred Hutchinson Cancer Research Center, University of Washington, Seattle, Washington, USA.

Paul Auer (P)

Department of Biostatistics, Institute for Health and Equity and Cancer Center, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.

JoAnn E Manson (JE)

Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Division of Preventive Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA.

Alexander Reiner (A)

Fred Hutchinson Cancer Research Center, University of Washington, Seattle, Washington, USA.
Department of Epidemiology, University of Washington, Seattle, Washington, USA.

Michael Simon (M)

Karmanos Cancer Institute, Detroit, Michigan, USA.

Classifications MeSH