Accelerating NMR Shielding Calculations Through Machine Learning Methods: Application to Magnesium Sodium Silicate Glasses.

NMR DFT Silicate Glasses KRR-SVM

Journal

Chemphyschem : a European journal of chemical physics and physical chemistry
ISSN: 1439-7641
Titre abrégé: Chemphyschem
Pays: Germany
ID NLM: 100954211

Informations de publication

Date de publication:
25 Jul 2024
Historique:
revised: 06 05 2024
received: 20 10 2023
accepted: 24 07 2024
medline: 26 7 2024
pubmed: 26 7 2024
entrez: 25 7 2024
Statut: aheadofprint

Résumé

In this work, we have applied the Kernel Ridge Regression (KRR) method using a Least Square Support Vector Regression (LSSVR) approach for the prediction of the NMR isotropic magnetic shielding (σiso) of active nuclei (17O, 23Na, 25Mg, and 29Si) in a series of (Mg, Na) - silicate glasses. The Machine Learning (ML) algorithm has been trained by mapping the local environment of each atom described by the Smooth Overlap of Atomic Position (SOAP) descriptor with isotropic chemical shielding values computed with DFT using the Gauge-Included-Projector-Augmented-Wave (GIPAW) approach. The influence of different training datasets generated through molecular dynamics simulations at various temperatures and with different inter-atomic potentials has been tested and we demonstrate the importance of a wide exploration of the configurational space to enhance the transferability of the ML-regressor.  Finally, the trained ML-regressor has been used to simulate the 29Si MAS NMR spectra of systems containing up to 20000 atoms by averaging hundreds of configurations extracted from classical MD simulations to account for thermal vibrations. This ML approach is a powerful tool for the interpretation of NMR spectra using relatively large systems at a fraction of the computational time required by quantum mechanical calculations which are of high computational cost.

Identifiants

pubmed: 39051606
doi: 10.1002/cphc.202300782
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e202300782

Informations de copyright

© 2024 Wiley‐VCH GmbH.

Auteurs

Marco Bertani (M)

University of Modena and Reggio Emilia: Universita degli Studi di Modena e Reggio Emilia, Department of Chemical and Geological Sciences, ITALY.

Alfonso Pedone (A)

University of Modena & Reggio Emilia, Department of Chemistry, via G. Campi 183, 41125, Modena, ITALY.

Francesco Faglioni (F)

University of Modena and Reggio Emilia: Universita degli Studi di Modena e Reggio Emilia, Department of Chemical and Geological Sciences, ITALY.

Thibault Charpentier (T)

CEA-Leti: Commissariat a l'energie atomique et aux energies alternatives Laboratoire d'electronique et de technologies de l'information, IRAMIS, FRANCE.

Classifications MeSH