Computer-aided prognosis of tuberculous meningitis combining imaging and non-imaging data.
DenseNet
Long short-term memory network
MRI imaging
Machine learning
Prognosis
Tuberculous meningitis
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
30 Jul 2024
30 Jul 2024
Historique:
received:
08
03
2024
accepted:
22
07
2024
medline:
31
7
2024
pubmed:
31
7
2024
entrez:
30
7
2024
Statut:
epublish
Résumé
Tuberculous meningitis (TBM) is the most lethal form of tuberculosis. Clinical features, such as coma, can predict death, but they are insufficient for the accurate prognosis of other outcomes, especially when impacted by co-morbidities such as HIV infection. Brain magnetic resonance imaging (MRI) characterises the extent and severity of disease and may enable more accurate prediction of complications and poor outcomes. We analysed clinical and brain MRI data from a prospective longitudinal study of 216 adults with TBM; 73 (34%) were HIV-positive, a factor highly correlated with mortality. We implemented an end-to-end framework to model clinical and imaging features to predict disease progression. Our model used state-of-the-art machine learning models for automatic imaging feature encoding, and time-series models for forecasting, to predict TBM progression. The proposed approach is designed to be robust to missing data via a novel tailored model optimisation framework. Our model achieved a 60% balanced accuracy in predicting the prognosis of TBM patients over the six different classes. HIV status did not alter the performance of the models. Furthermore, our approach identified brain morphological lesions caused by TBM in both HIV and non-HIV-infected, associating lesions to the disease staging with an overall accuracy of 96%. These results suggest that the lesions caused by TBM are analogous in both populations, regardless of the severity of the disease. Lastly, our models correctly identified changes in disease symptomatology and severity in 80% of the cases. Our approach is the first attempt at predicting the prognosis of TBM by combining imaging and clinical data, via a machine learning model. The approach has the potential to accurately predict disease progression and enable timely clinical intervention.
Identifiants
pubmed: 39080381
doi: 10.1038/s41598-024-68308-8
pii: 10.1038/s41598-024-68308-8
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
17581Subventions
Organisme : Wellcome EPSRC Centre for Medical Engineering
ID : 203148/Z/16/Z
Organisme : Wellcome Trust
ID : 215010/Z/18/Z
Pays : United Kingdom
Organisme : EPSRC
ID : EP/T022205/1
Investigateurs
Dang Phuong Thao
(DP)
Dang Trung Kien
(DT)
Doan Bui Xuan Thy
(DBX)
Dong Huu Khanh Trinh
(DHK)
Du Hong Duc
(DH)
Ronald Geskus
(R)
Ho Bich Hai
(HB)
Ho Quang Chanh
(HQ)
Ho Van Hien
(H)
Huynh Trung Trieu
(HT)
Evelyne Kestelyn
(E)
Lam Minh Yen
(LM)
Le Dinh Van Khoa
(LD)
Le Thanh Phuong
(LT)
Le Thuy Thuy Khanh
(LTT)
Luu Hoai Bao Tran
(LHB)
Luu Phuoc An
(LP)
Angela Mcbride
(A)
Nguyen Lam Vuong
(NL)
Nguyen Quang Huy
(NQ)
Nguyen Than Ha Quyen
(NTH)
Nguyen Thanh Ngoc
(NT)
Nguyen Thi Giang
(NT)
Nguyen Thi Diem Trinh
(NTD)
Nguyen Thi Le Thanh
(NT)
Nguyen Thi Phuong Dung
(NTP)
Nguyen Thi Phuong Thao
(NTP)
Ninh Thi Thanh Van
(NTT)
Pham Tieu Kieu
(PT)
Phan Nguyen Quoc Khanh
(PNQ)
Phung Khanh Lam
(PK)
Phung Tran Huy Nhat
(PTH)
Guy Thwaites
(G)
Louise Thwaites
(L)
Tran Minh Duc
(TM)
Trinh Manh Hung
(TM)
Hugo Turner
(H)
Jennifer Ilo Van Nuil
(JI)
Vo Tan Hoang
(VT)
Vu Ngo Thanh Huyen
(VNT)
Sophie Yacoub
(S)
Cao Thi Tam
(CT)
Duong Bich Thuy
(DB)
Ha Thi Hai Duong
(HTH)
Ho Dang Trung Nghia
(HDT)
Le Buu Chau
(LB)
Le Mau Toan
(LM)
Le Ngoc Minh Thu
(LNM)
Le Thi Mai Thao
(LTM)
Luong Thi Hue Tai
(LTH)
Nguyen Hoan Phu
(NH)
Nguyen Quoc Viet
(NQ)
Nguyen Thanh Dung
(NT)
Nguyen Thanh Nguyen
(NT)
Nguyen Thanh Phong
(NT)
Nguyen Thi Kim Anh
(NTK)
Nguyen Van Hao
(N)
Nguyen Van Thanh Duoc
(N)
Pham Kieu Nguyet Oanh
(PKN)
Phan Thi Hong Van
(PTH)
Phan Tu Qui
(PT)
Phan Vinh Tho
(PV)
Truong Thi Phuong Thao
(TTP)
Natasha Ali
(N)
David Clifton
(D)
Mike English
(M)
Jannis Hagenah
(J)
Ping Lu
(P)
Jacob McKnight
(J)
Chris Paton
(C)
Tingting Zhu
(T)
Pantelis Georgiou
(P)
Bernard Hernandez Perez
(BH)
Kerri Hill-Cawthorne
(K)
Alison Holmes
(A)
Stefan Karolcik
(S)
Damien Ming
(D)
Nicolas Moser
(N)
Jesus Rodriguez Manzano
(JR)
Liane Canas
(L)
Alberto Gomez
(A)
Hamideh Kerdegari
(H)
Andrew King
(A)
Marc Modat
(M)
Reza Razavi
(R)
Miguel Xochicale
(M)
Walter Karlen
(W)
Linda Denehy
(L)
Thomas Rollinson
(T)
Luigi Pisani
(L)
Marcus Schultz
(M)
Informations de copyright
© 2024. The Author(s).
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