Conformation-Dependent Hydrogen-Bonding Interactions in a Switchable Artificial Metalloprotein.


Journal

Biochemistry
ISSN: 1520-4995
Titre abrégé: Biochemistry
Pays: United States
ID NLM: 0370623

Informations de publication

Date de publication:
01 Aug 2024
Historique:
medline: 1 8 2024
pubmed: 1 8 2024
entrez: 1 8 2024
Statut: aheadofprint

Résumé

Hydrogen-bonding (H-bonding) interactions in metalloprotein active sites can critically regulate enzyme function. Changes in the protein structure triggered by interplay with substrates, products, and partner proteins are often translated to the metallocofactor by way of specific changes in H-bond networks connected to the active site. However, the complexities of metalloprotein architecture and mechanism often preclude our ability to define the precise molecular interactions giving rise to these intricate regulatory pathways. To address this shortcoming, we have developed conformationally switchable artificial metalloproteins (swArMs) in which allosteric Gln-binding triggers protein conformational changes that impact the microenvironment surrounding an installed metallocofactor. Herein, we report a combined structural, spectroscopic, and computational approach to enhance the conformation-dependent changes in H-bond interactions surrounding the metallocofactor site of a swArM. Structure-informed molecular dynamics simulations were employed to predict point mutations that could enhance active site H-bond interactions preferentially in the Gln-bound

Identifiants

pubmed: 39088332
doi: 10.1021/acs.biochem.4c00209
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Auteurs

Saman Fatima (S)

Department of Chemistry, Center for Biophysics and Quantitative Biology, Materials Research Laboratory, and the Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, 600 S. Mathews Ave., Urbana, Illinois 61801, United States.

Behzad Mehrafrooz (B)

Beckman Institute for Advanced Science and Technology, Center for Biophysics and Quantitative Biology, and Department of Physics, University of Illinois Urbana-Champaign, Urbana, Illinois 61801, United States.

David G Boggs (DG)

Department of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, Michigan 48109, United States.

Noor Ali (N)

Department of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, United States.

Swapnil Singh (S)

Department of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, United States.

Megan C Thielges (MC)

Department of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, United States.

Jennifer Bridwell-Rabb (J)

Department of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, Michigan 48109, United States.

Aleksei Aksimentiev (A)

Beckman Institute for Advanced Science and Technology, Center for Biophysics and Quantitative Biology, and Department of Physics, University of Illinois Urbana-Champaign, Urbana, Illinois 61801, United States.

Lisa Olshansky (L)

Department of Chemistry, Center for Biophysics and Quantitative Biology, Materials Research Laboratory, and the Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, 600 S. Mathews Ave., Urbana, Illinois 61801, United States.

Classifications MeSH