GelBox: Open-source software to improve rigor and reproducibility when analyzing gels and immunoblots.

Gel Electrophoresis Image analysis Immunoblotting Rigor Software

Journal

American journal of physiology. Heart and circulatory physiology
ISSN: 1522-1539
Titre abrégé: Am J Physiol Heart Circ Physiol
Pays: United States
ID NLM: 100901228

Informations de publication

Date de publication:
02 Aug 2024
Historique:
medline: 2 8 2024
pubmed: 2 8 2024
entrez: 2 8 2024
Statut: aheadofprint

Résumé

GelBox is open-source software that was developed with the goal of enhancing rigor, reproducibility, and transparency when analyzing gels and immunoblots. It combines image adjustments (cropping, rotation, brightness, and contrast), background correction, and band-fitting in a single application. Users can also associate each lane in an image with metadata (for example, sample type). GelBox data files integrate the raw data, supplied metadata, image adjustments, and band-level analyses in a single file to improve traceability. GelBox has a user-friendly interface and was developed using MATLAB. The software, installation instructions, and tutorials, are available at https://campbell-muscle-lab.github.io/GelBox/.

Identifiants

pubmed: 39092999
doi: 10.1152/ajpheart.00144.2024
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Auteurs

Utku Gulbulak (U)

Divisions of Cardiovascular Medicine, University of Kentucky, Lexington, Kentucky, United States.

Austin G Wellette-Hunsucker (AG)

Physiology, University of Kentucky, Lexington, Kentucky, United States.

Thomas Kampourakis (T)

Internal Medicine, University of Kentucky, Lexington, Kentucky, United States.

Kenneth S Campbell (KS)

Internal Medicine, University of Kentucky, Lexington, Kentucky, United States.

Classifications MeSH