Insights into the radiation and oxidative stress mechanisms in genus Deinococcus.

Deinococcus Extremophile Network analysis Protein-protein interaction Radiation-resistance

Journal

Computational biology and chemistry
ISSN: 1476-928X
Titre abrégé: Comput Biol Chem
Pays: England
ID NLM: 101157394

Informations de publication

Date de publication:
25 Jul 2024
Historique:
received: 24 05 2024
revised: 04 07 2024
accepted: 24 07 2024
medline: 9 8 2024
pubmed: 9 8 2024
entrez: 8 8 2024
Statut: aheadofprint

Résumé

Deinococcus species, noted for their exceptional resistance to DNA-damaging environmental stresses, have piqued scientists' interest for decades. This study dives into the complex mechanisms underpinning radiation resistance in the Deinococcus genus. We have examined the genomes of 82 Deinococcus species and classified radiation-resistance proteins manually into five unique curated categories: DNA repair, oxidative stress defense, Ddr and Ppr proteins, regulatory proteins, and miscellaneous resistance components. This classification reveals important information about the various molecular mechanisms used by these extremophiles which have been less explored so far. We also investigated the presence or lack of these proteins in the context of phylogenetic relationships, core, and pan-genomes, which offered light on the evolutionary dynamics of radiation resistance. This comprehensive study provides a deeper understanding of the genetic underpinnings of radiation resistance in the Deinococcus genus, with potential implications for understanding similar mechanisms in other organisms using an interactomics approach. Finally, this study reveals the complexities of radiation resistance mechanisms, providing a comprehensive understanding of the genetic components that allow Deinococcus species to flourish under harsh environments. The findings add to our understanding of the larger spectrum of stress adaption techniques in bacteria and may have applications in sectors ranging from biotechnology to environmental research.

Identifiants

pubmed: 39116702
pii: S1476-9271(24)00149-X
doi: 10.1016/j.compbiolchem.2024.108161
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

108161

Informations de copyright

Copyright © 2024 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest Authors declare no conflict of interest.

Auteurs

Nirjara Singhvi (N)

School of Allied Sciences, Dev Bhoomi Uttarakhand University, Dehradun 248007, India.

Chandni Talwar (C)

Department of Pathology and Immunology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

Shekhar Nagar (S)

Department of Zoology, Deshbandhu College, University of Delhi, New Delhi 110019, India.

Helianthous Verma (H)

Department of Zoology, Ramjas College, University of Delhi, Delhi 110007, India.

Jasvinder Kaur (J)

Department of Zoology, Gargi College, University of Delhi, New Delhi 110049, India.

Nitish Kumar Mahato (NK)

University Department of Zoology, Kolhan University, Chaibasa, Jharkhand, India.

Nabeel Ahmad (N)

School of Allied Sciences, Dev Bhoomi Uttarakhand University, Dehradun 248007, India.

Krishnendu Mondal (K)

Ministry of Environment, Forest and Climate Change, Integrated Regional Office, Dehradun 248001, India.

Vipin Gupta (V)

Ministry of Environment, Forest and Climate Change, Integrated Regional Office, Dehradun 248001, India. Electronic address: guptavipin142@gmail.com.

Rup Lal (R)

Acharya Narendra Dev College, University of Delhi, New Delhi 110019, India. Electronic address: ruplal@gmail.com.

Classifications MeSH