Development of electronic health record based algorithms to identify individuals with diabetic retinopathy.

algorithm development algorithm validation diabetes complications diabetic retinopathy

Journal

Journal of the American Medical Informatics Association : JAMIA
ISSN: 1527-974X
Titre abrégé: J Am Med Inform Assoc
Pays: England
ID NLM: 9430800

Informations de publication

Date de publication:
19 Aug 2024
Historique:
received: 08 01 2024
revised: 17 07 2024
accepted: 30 07 2024
medline: 19 8 2024
pubmed: 19 8 2024
entrez: 19 8 2024
Statut: aheadofprint

Résumé

To develop, validate, and implement algorithms to identify diabetic retinopathy (DR) cases and controls from electronic health care records (EHRs). We developed and validated electronic health record (EHR)-based algorithms to identify DR cases and individuals with type I or II diabetes without DR (controls) in 3 independent EHR systems: Vanderbilt University Medical Center Synthetic Derivative (VUMC), the VA Northeast Ohio Healthcare System (VANEOHS), and Massachusetts General Brigham (MGB). Cases were required to meet 1 of the following 3 criteria: (1) 2 or more dates with any DR ICD-9/10 code documented in the EHR, (2) at least one affirmative health-factor or EPIC code for DR along with an ICD9/10 code for DR on a different day, or (3) at least one ICD-9/10 code for any DR occurring within 24 hours of an ophthalmology examination. Criteria for controls included affirmative evidence for diabetes as well as an ophthalmology examination. The algorithms, developed and evaluated in VUMC through manual chart review, resulted in a positive predictive value (PPV) of 0.93 for cases and negative predictive value (NPV) of 0.91 for controls. Implementation of algorithms yielded similar metrics in VANEOHS (PPV = 0.94; NPV = 0.86) and lower in MGB (PPV = 0.84; NPV = 0.76). In comparison, the algorithm for DR implemented in Phenome-wide association study (PheWAS) in VUMC yielded similar PPV (0.92) but substantially reduced NPV (0.48). Implementation of the algorithms to the Million Veteran Program identified over 62 000 DR cases with genetic data including 14 549 African Americans and 6209 Hispanics with DR. We demonstrate the robustness of the algorithms at 3 separate healthcare centers, with a minimum PPV of 0.84 and substantially improved NPV than existing automated methods. We strongly encourage independent validation and incorporation of features unique to each EHR to enhance algorithm performance for DR cases and controls.

Identifiants

pubmed: 39158361
pii: 7735830
doi: 10.1093/jamia/ocae213
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIH HHS
ID : F31 EY033663
Pays : United States
Organisme : VA Office of Research and Development
ID : I01 CX001298

Informations de copyright

© The Author(s) 2024. Published by Oxford University Press on behalf of the American Medical Informatics Association.

Auteurs

Joseph H Breeyear (JH)

Division of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, United States.
VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.

Sabrina L Mitchell (SL)

VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.
Department of Ophthalmology and Visual Sciences, Vanderbilt University Medical Center, Nashville, TN 37232, United States.

Cari L Nealon (CL)

Eye Clinic, VA Northeast Ohio Healthcare System, Cleveland, OH 44106, United States.

Jacklyn N Hellwege (JN)

VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.
Vanderbilt Genetics Institute, Vanderbilt University, Nashville, TN 37232, United States.
Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, United States.

Brian Charest (B)

Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA 02111, United States.

Anjali Khakharia (A)

VA Atlanta Healthcare System, Decatur, GA 30033, United States.
Department of Medicine and Geriatrics, Emory University School of Medicine, Atlanta, GA 30307, United States.

Christopher W Halladay (CW)

Providence VA Medical Center, Providence, RI 02908, United States.

Janine Yang (J)

Department of Ophthalmology, Mass Eye and Ear Infirmary, Harvard Medical School, Boston, MA 02114, United States.

Gustavo A Garriga (GA)

Division of Quantitative and Clinical Sciences, Department of Obstetrics and Gynecology, Vanderbilt University Medical Center, Nashville, TN 37232, United States.

Otis D Wilson (OD)

VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.
Division of Nephrology and Hypertension, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, United States.

Til B Basnet (TB)

VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.
Vanderbilt Genetics Institute, Vanderbilt University, Nashville, TN 37232, United States.
Division of Quantitative and Clinical Sciences, Department of Obstetrics and Gynecology, Vanderbilt University Medical Center, Nashville, TN 37232, United States.

Adriana M Hung (AM)

VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.
Division of Nephrology and Hypertension, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, United States.

Peter D Reaven (PD)

Phoenix VA Health Care System, Phoenix, AZ 85012, United States.
College of Medicine, University of Arizona, Phoenix, AZ 85721, United States.

James B Meigs (JB)

Program in Medical and Population Genetics, Broad Institute, Cambridge, MA 02142, United States.
Department of Medicine, Harvard Medical School, Boston, MA 02115, United States.
Division of General Internal Medicine, Massachusetts General Hospital, Boston, MA 02114, United States.

Mary K Rhee (MK)

VA Atlanta Healthcare System, Decatur, GA 30033, United States.
Division of Endocrinology, Metabolism, and Lipids, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30307, United States.

Yang Sun (Y)

Department of Ophthalmology, Stanford University School of Medicine, Palo Alto, CA 94305, United States.

Mary G Lynch (MG)

VA Atlanta Healthcare System, Decatur, GA 30033, United States.

Lucia Sobrin (L)

Department of Ophthalmology, Mass Eye and Ear Infirmary, Harvard Medical School, Boston, MA 02114, United States.

Milam A Brantley (MA)

VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.
Department of Ophthalmology and Visual Sciences, Vanderbilt University Medical Center, Nashville, TN 37232, United States.
Vanderbilt Genetics Institute, Vanderbilt University, Nashville, TN 37232, United States.

Yan V Sun (YV)

VA Atlanta Healthcare System, Decatur, GA 30033, United States.
Department of Epidemiology, Emory University Rollins School of Public Health, Atlanta, GA 30307, United States.
Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, GA 30307, United States.

Peter W Wilson (PW)

VA Atlanta Healthcare System, Decatur, GA 30033, United States.
Division of Cardiology, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30307, United States.

Sudha K Iyengar (SK)

Research Service, VA Northeast Ohio Healthcare System, Cleveland, OH 44106, United States.
Department of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, OH 44106, United States.

Neal S Peachey (NS)

Research Service, VA Northeast Ohio Healthcare System, Cleveland, OH 44106, United States.
Cole Eye Institute, Cleveland Clinic, Cleveland, OH 44106, United States.
Department of Ophthalmology, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, Cleveland, OH 44195, United States.

Lawrence S Phillips (LS)

VA Atlanta Healthcare System, Decatur, GA 30033, United States.
Division of Endocrinology, Metabolism, and Lipids, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30307, United States.

Todd L Edwards (TL)

Division of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, United States.
VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.

Ayush Giri (A)

Division of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, United States.
VA Tennessee Valley Healthcare System (626), Nashville, TN 37212, United States.
Vanderbilt Genetics Institute, Vanderbilt University, Nashville, TN 37232, United States.
Division of Quantitative and Clinical Sciences, Department of Obstetrics and Gynecology, Vanderbilt University Medical Center, Nashville, TN 37232, United States.

Classifications MeSH