The systemic complexity of a monogenic disease: the molecular network of spinal muscular atrophy.

metabolomics monogenic disease network analysis phosphoproteomics spinal muscular atrophy translatomics

Journal

Brain : a journal of neurology
ISSN: 1460-2156
Titre abrégé: Brain
Pays: England
ID NLM: 0372537

Informations de publication

Date de publication:
26 Aug 2024
Historique:
received: 07 03 2024
revised: 20 06 2024
accepted: 19 08 2024
medline: 26 8 2024
pubmed: 26 8 2024
entrez: 25 8 2024
Statut: aheadofprint

Résumé

Monogenic diseases are well-suited paradigms for the causal analysis of disease-driving molecular patterns. Spinal Muscular Atrophy (SMA) is one such monogenic model caused by mutation or deletion of the Survival of motor neuron 1 (SMN1) gene. Although several functions of the SMN protein have been studied, single functions and pathways alone do not allow to identify critical disease-driving molecules. Here, we analyzed the systemic characteristics of SMA employing proteomics, phosphoproteomics, translatomics and interactomics from two mouse models with different disease-severities and genetics. This systems approach revealed sub-networks and proteins characterizing commonalities and differences of both models. To link the identified molecular networks with the disease-causing SMN protein, we combined SMN-interactome data with both proteomes creating a comprehensive representation of SMA. By this approach, disease hubs and bottlenecks between SMN and downstream pathways could be identified. Linking a disease-causing molecule with widespread molecular dysregulations via multiomics is a concept for analyses of monogenic diseases.

Identifiants

pubmed: 39183150
pii: 7740558
doi: 10.1093/brain/awae272
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© The Author(s) 2024. Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact journals.permissions@oup.com.

Auteurs

Ines Tapken (I)

SMATHERIA gGmbH - Non-Profit Biomedical Research Institute, 30625 Hannover, Germany.
Center for Systems Neurosciences (ZSN), 30559 Hannover, Germany.

Theresa Schweitzer (T)

Research Core Unit Proteomics, Hannover Medical School (MHH), 30625 Hannover, Germany.
Institute of Toxicology, Hannover Medical School (MHH), 30625 Hannover, Germany.

Martina Paganin (M)

Institute of Biophysics, CNR Unit, 38123 Trento, Italy.

Tobias Schüning (T)

SMATHERIA gGmbH - Non-Profit Biomedical Research Institute, 30625 Hannover, Germany.

Nora T Detering (NT)

SMATHERIA gGmbH - Non-Profit Biomedical Research Institute, 30625 Hannover, Germany.
Center for Systems Neurosciences (ZSN), 30559 Hannover, Germany.

Gaurav Sharma (G)

Institute of Biophysics, CNR Unit, 38123 Trento, Italy.

Moritz Niesert (M)

Heidelberg University, Center for Pediatrics and Adolescent Medicine, Department of Pediatrics I, 69120 Heidelberg, Germany.

Afshin Saffari (A)

Heidelberg University, Center for Pediatrics and Adolescent Medicine, Department of Pediatrics I, 69120 Heidelberg, Germany.

Daniela Kuhn (D)

SMATHERIA gGmbH - Non-Profit Biomedical Research Institute, 30625 Hannover, Germany.
Department of Conservative Dentistry, Periodontology and Preventive Dentistry, Hannover Medical School, 30625 Hannover, Germany.

Amy Glynn (A)

SMATHERIA gGmbH - Non-Profit Biomedical Research Institute, 30625 Hannover, Germany.

Federica Cieri (F)

Institute of Biosciences and Bioresources (IBBR), CNR, 80131 Naples, Italy.
Department of Biology, University of Naples Federico II, 80131 Naples, Italy.

Pamela Santonicola (P)

Institute of Biosciences and Bioresources (IBBR), CNR, 80131 Naples, Italy.

Claire Cannet (C)

Bruker Biospin GmbH, 76275 Ettlingen, Germany.

Florian Gerstner (F)

Carl-Ludwig-Institute for Physiology, Leipzig University, 04103 Leipzig, Germany.

Kiterie M E Faller (KME)

Euan MacDonald Centre for Motor Neurone Disease Research, University of Edinburgh, EH8 9AG Edinburgh, UK.

Yu-Ting Huang (YT)

Euan MacDonald Centre for Motor Neurone Disease Research, University of Edinburgh, EH8 9AG Edinburgh, UK.

Rashmi Kothary (R)

Ottawa Hospital Research Institute, Ottawa, Canada and Faculty of Medicine, University of Ottawa, K1H 8L6 Ottawa, Canada.

Thomas H Gillingwater (TH)

Euan MacDonald Centre for Motor Neurone Disease Research, University of Edinburgh, EH8 9AG Edinburgh, UK.

Elia Di Schiavi (E)

Institute of Biosciences and Bioresources (IBBR), CNR, 80131 Naples, Italy.

Christian M Simon (CM)

Carl-Ludwig-Institute for Physiology, Leipzig University, 04103 Leipzig, Germany.

Niko Hensel (N)

Department of Anatomy and Cell Biology, Martin Luther University Halle-Wittenberg, Faculty of Medicine, 06108 Halle (Saale), Germany.

Andreas Ziegler (A)

Heidelberg University, Center for Pediatrics and Adolescent Medicine, Department of Pediatrics I, 69120 Heidelberg, Germany.

Gabriella Viero (G)

Institute of Biophysics, CNR Unit, 38123 Trento, Italy.

Andreas Pich (A)

Research Core Unit Proteomics, Hannover Medical School (MHH), 30625 Hannover, Germany.
Institute of Toxicology, Hannover Medical School (MHH), 30625 Hannover, Germany.

Peter Claus (P)

SMATHERIA gGmbH - Non-Profit Biomedical Research Institute, 30625 Hannover, Germany.
Center for Systems Neurosciences (ZSN), 30559 Hannover, Germany.

Classifications MeSH