Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature.

crambin dynamic disorder independent atom model radiation damage solvent modeling static disorder sub-atomic resolution water circuits

Journal

IUCrJ
ISSN: 2052-2525
Titre abrégé: IUCrJ
Pays: England
ID NLM: 101623101

Informations de publication

Date de publication:
01 Sep 2024
Historique:
medline: 27 8 2024
pubmed: 27 8 2024
entrez: 27 8 2024
Statut: aheadofprint

Résumé

Ultrahigh-resolution structures provide unprecedented details about protein dynamics, hydrogen bonding and solvent networks. The reported 0.70 Å, room-temperature crystal structure of crambin is the highest-resolution ambient-temperature structure of a protein achieved to date. Sufficient data were collected to enable unrestrained refinement of the protein and associated solvent networks using SHELXL. Dynamic solvent networks resulting from alternative side-chain conformations and shifts in water positions are revealed, demonstrating that polypeptide flexibility and formation of clathrate-type structures at hydrophobic surfaces are the key features endowing crambin crystals with extraordinary diffraction power.

Identifiants

pubmed: 39190507
pii: S2052252524007784
doi: 10.1107/S2052252524007784
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : U.S. Department of Energy, Office of Science
ID : DE-AC02-06CH11357
Organisme : NIH HHS
ID : R35GM145365
Pays : United States

Informations de copyright

open access.

Auteurs

Julian C H Chen (JCH)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Miroslaw Gilski (M)

Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznań Poland.

Changsoo Chang (C)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Dominika Borek (D)

Department of Biophysics and Department of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX USA.

Gerd Rosenbaum (G)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Alex Lavens (A)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Zbyszek Otwinowski (Z)

Department of Biophysics and Department of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX USA.

Maciej Kubicki (M)

Department of Crystallography, Faculty of Chemistry, Adam Mickiewicz University in Poznań, Poznań, Poland.

Zbigniew Dauter (Z)

Macromolecular Crystallography Laboratory, National Cancer Institute at Frederick, Frederick, MD 21702, USA.

Mariusz Jaskolski (M)

Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznań Poland.

Andrzej Joachimiak (A)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Classifications MeSH