Self-Adaptive Teacher-Student framework for colon polyp segmentation from unannotated private data with public annotated datasets.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2024
Historique:
received: 07 02 2024
accepted: 10 07 2024
medline: 29 8 2024
pubmed: 29 8 2024
entrez: 28 8 2024
Statut: epublish

Résumé

Colon polyps have become a focal point of research due to their heightened potential to develop into appendiceal cancer, which has the highest mortality rate globally. Although numerous colon polyp segmentation methods have been developed using public polyp datasets, they tend to underperform on private datasets due to inconsistencies in data distribution and the difficulty of fine-tuning without annotations. In this paper, we propose a Self-Adaptive Teacher-Student (SATS) framework to segment colon polyps from unannotated private data by utilizing multiple publicly annotated datasets. The SATS trains multiple teacher networks on public datasets and then generates pseudo-labels on private data to assist in training a student network. To enhance the reliability of the pseudo-labels from the teacher networks, the SATS includes a newly proposed Uncertainty and Distance Fusion (UDFusion) strategy. UDFusion dynamically adjusts the pseudo-label weights based on a novel reconstruction similarity measure, innovatively bridging the gap between private and public data distributions. To ensure accurate identification and segmentation of colon polyps, the SATS also incorporates a Granular Attention Network (GANet) architecture for both teacher and student networks. GANet first identifies polyps roughly from a global perspective by encoding long-range anatomical dependencies and then refines this identification to remove false-positive areas through multi-scale background-foreground attention. The SATS framework was validated using three public datasets and one private dataset, achieving 76.30% on IoU, 86.00% on Recall, and 7.01 pixels on HD. These results outperform the existing five methods, indicating the effectiveness of this approach for colon polyp segmentation.

Identifiants

pubmed: 39196967
doi: 10.1371/journal.pone.0307777
pii: PONE-D-24-03994
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0307777

Informations de copyright

Copyright: © 2024 Jia et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Auteurs

Yiwen Jia (Y)

Department of Gastroenterology, The Third Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.

Guangming Feng (G)

Department of Gastroenterology, The Third Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.

Tang Yang (T)

Department of Gastroenterology, The Third Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.

Siyuan Chen (S)

Department of Gastroenterology, The Third Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.

Fu Dai (F)

Department of Gastroenterology, The Third Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.

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