Average Nucleotide Identity and Digital DNA-DNA Hybridization Analysis Following PromethION Nanopore-Based Whole Genome Sequencing Allows for Accurate Prokaryotic Typing.
Escherichia coli
antibiotic resistance
average nucleotide identity
clinical bacteriology
digital DNA-DNA hybridization
minimum inhibitory concentration
multi-locus sequence typing
nanopore sequencing
species delineation
whole genome sequencing
Journal
Diagnostics (Basel, Switzerland)
ISSN: 2075-4418
Titre abrégé: Diagnostics (Basel)
Pays: Switzerland
ID NLM: 101658402
Informations de publication
Date de publication:
17 Aug 2024
17 Aug 2024
Historique:
received:
31
05
2024
revised:
31
07
2024
accepted:
13
08
2024
medline:
31
8
2024
pubmed:
31
8
2024
entrez:
29
8
2024
Statut:
epublish
Résumé
Whole-genome sequencing (WGS) is revolutionizing clinical bacteriology. However, bacterial typing remains investigated by reference techniques with inherent limitations. This stresses the need for alternative methods providing robust and accurate sequence type (ST) classification. This study optimized and evaluated a GridION nanopore sequencing protocol, adapted for the PromethION platform. Forty-eight
Identifiants
pubmed: 39202288
pii: diagnostics14161800
doi: 10.3390/diagnostics14161800
pmc: PMC11353866
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Research Foundation - Flanders
ID : 1S97421N
Organisme : Special Research Fund of Ghent University
ID : BOF.COV.2020.0009.01
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