Code sharing in ecology and evolution increases citation rates but remains uncommon.

R software code sharing open access open data open science reproducibility

Journal

Ecology and evolution
ISSN: 2045-7758
Titre abrégé: Ecol Evol
Pays: England
ID NLM: 101566408

Informations de publication

Date de publication:
Aug 2024
Historique:
received: 14 11 2023
revised: 03 07 2024
accepted: 05 07 2024
medline: 31 8 2024
pubmed: 31 8 2024
entrez: 29 8 2024
Statut: epublish

Résumé

Biologists increasingly rely on computer code to collect and analyze their data, reinforcing the importance of published code for transparency, reproducibility, training, and a basis for further work. Here, we conduct a literature review estimating temporal trends in code sharing in ecology and evolution publications since 2010, and test for an influence of code sharing on citation rate. We find that code is rarely published (only 6% of papers), with little improvement over time. We also found there may be incentives to publish code: Publications that share code have tended to be low-impact initially, but accumulate citations faster, compensating for this deficit. Studies that additionally meet other Open Science criteria, open-access publication, or data sharing, have still higher citation rates, with publications meeting all three criteria (code sharing, data sharing, and open access publication) tending to have the most citations and highest rate of citation accumulation.

Identifiants

pubmed: 39206460
doi: 10.1002/ece3.70030
pii: ECE370030
pmc: PMC11349484
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e70030

Informations de copyright

© 2024 The Author(s). Ecology and Evolution published by John Wiley & Sons Ltd.

Déclaration de conflit d'intérêts

The authors declare no competing interests.

Auteurs

Brian Maitner (B)

Department of Integrative Biology University of South Florida St. Petersburg Florida USA.
Department of Geography University at Buffalo Buffalo New York USA.

Paul Efren Santos Andrade (PE)

Departamento de Ecologia Universidad Nacional San Antonio Abad del Cusco Cusco Peru.

Luna Lei (L)

University at Buffalo Buffalo New York USA.

Jamie Kass (J)

Macroecology Laboratory, Graduate School of Life Sciences Tohoku University Sendai Miyagi Japan.

Hannah L Owens (HL)

Center for Global Mountain Biodiversity, Globe Institute University of Copenhagen Copenhagen Denmark.
Center for Macroecology, Evolution, and Climate, Globe Institute University of Copenhagen Copenhagen Denmark.
Florida Museum of Natural History University of Florida Gainesville Florida USA.

George C G Barbosa (GCG)

Department of Computer Science University of Arizona Tucson Arizona USA.

Brad Boyle (B)

Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona USA.

Matiss Castorena (M)

Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona USA.

Brian J Enquist (BJ)

Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona USA.
The Santa Fe Institute Santa Fe New Mexico USA.

Xiao Feng (X)

Department of Biology University of North Carolina at Chapel Hill Chapel Hill North Carolina USA.

Daniel S Park (DS)

Department of Biological Sciences Purdue University West Lafayette Indiana USA.
Purdue Center for Plant Biology Purdue University West Lafayette Indiana USA.

Andrea Paz (A)

Department of Environmental Systems Science, Institute of Integrative Biology ETH Zürich Zürich Switzerland.
Département de Sciences Biologiques Université de Montréal Montreal Québec Canada.

Gonzalo Pinilla-Buitrago (G)

PhD Program in Biology, The Graduate Center and Department of Biology, City College of New York City University of New York New York New York USA.

Cory Merow (C)

Eversource Energy Center and Department of Ecology and Evolutionary Biology University of Connecticut Storrs Connecticut USA.

Adam Wilson (A)

Department of Geography University at Buffalo Buffalo New York USA.

Classifications MeSH