Simple Analysis of Gel Images With IOCBIO Gel Software.
Data analysis
Electrophoresis gel
FAIR
Isoelectric focusing
Python
Reproducibility
Southern blotting
Western blotting
Journal
Bio-protocol
ISSN: 2331-8325
Titre abrégé: Bio Protoc
Pays: United States
ID NLM: 101635102
Informations de publication
Date de publication:
20 Aug 2024
20 Aug 2024
Historique:
received:
10
05
2023
revised:
12
07
2024
accepted:
15
07
2024
medline:
1
9
2024
pubmed:
1
9
2024
entrez:
30
8
2024
Statut:
epublish
Résumé
Gel image analyses are often difficult to reproduce, as the most commonly used software, the ImageJ Gels plugin, does not automatically record any steps in the analysis process. This protocol provides detailed steps for image analysis using IOCBIO Gel software with western blot as an example; however, the protocol is applicable to all images obtained by electrophoresis, such as Southern blotting, northern blotting, and isoelectric focusing. IOCBIO Gel allows multiple sample analyses, linking the original image to all the operations performed on it, which can be stored in a central database or on a PC, ensuring ease of access and the possibility to perform corrections at each analysis stage. In addition, IOCBIO Gel is lightweight, with only minimal computer requirements. Key features • Free and open-source software for analyzing gel images. • Reproducibility. • Can be used with images obtained by electrophoresis, such as western blotting, Southern blotting, isoelectric focusing, and more.
Identifiants
pubmed: 39210956
doi: 10.21769/BioProtoc.5053
pii: e5053
pmc: PMC11349490
doi:
Types de publication
Journal Article
Langues
eng
Pagination
e5053Informations de copyright
©Copyright : © 2024 The Authors; This is an open access article under the CC BY license.
Déclaration de conflit d'intérêts
Competing interestsThe authors declare that they have no competing interests.
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