Evolution of gene regulatory networks by means of selection and random genetic drift.


Journal

PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425

Informations de publication

Date de publication:
2024
Historique:
received: 27 12 2023
accepted: 23 07 2024
medline: 2 9 2024
pubmed: 2 9 2024
entrez: 2 9 2024
Statut: epublish

Résumé

The evolution of a population by means of genetic drift and natural selection operating on a gene regulatory network (GRN) of an individual has not been scrutinized in depth. Thus, the relative importance of various evolutionary forces and processes on shaping genetic variability in GRNs is understudied. In this study, we implemented a simulation framework, called EvoNET, that simulates forward-in-time the evolution of GRNs in a population. The fitness effect of mutations is not constant, rather fitness of each individual is evaluated on the phenotypic level, by measuring its distance from an optimal phenotype. Each individual goes through a maturation period, where its GRN may reach an equilibrium, thus deciding its phenotype. Afterwards, individuals compete to produce the next generation. We examine properties of the GRN evolution, such as robustness against the deleterious effect of mutations and the role of genetic drift. We are able to confirm previous hypotheses regarding the effect of mutations and we provide new insights on the interplay between random genetic drift and natural selection.

Identifiants

pubmed: 39221262
doi: 10.7717/peerj.17918
pii: 17918
pmc: PMC11365478
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e17918

Informations de copyright

© 2024 Papadadonakis et al.

Déclaration de conflit d'intérêts

The authors declare that they have no competing interests.

Auteurs

Stefanos Papadadonakis (S)

Institute of Computer Science, Foundation for Research and Technology Hellas, Heraklion, Crete, Greece.
Department of Biology, University of Crete, Heraklion, Crete, Greece.

Antonios Kioukis (A)

School of Medicine, University of Crete, Heraklion, Crete, Greece.

Charikleia Karageorgiou (C)

Department of Biological Sciences, University at Buffalo, New York, New York, United States.

Pavlos Pavlidis (P)

Institute of Computer Science, Foundation for Research and Technology Hellas, Heraklion, Crete, Greece.
Department of Biology, University of Crete, Heraklion, Crete, Greece.

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Classifications MeSH