Virtual birefringence imaging and histological staining of amyloid deposits in label-free tissue using autofluorescence microscopy and deep learning.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
12 Sep 2024
Historique:
received: 02 03 2024
accepted: 02 09 2024
medline: 13 9 2024
pubmed: 13 9 2024
entrez: 12 9 2024
Statut: epublish

Résumé

Systemic amyloidosis involves the deposition of misfolded proteins in organs/tissues, leading to progressive organ dysfunction and failure. Congo red is the gold-standard chemical stain for visualizing amyloid deposits in tissue, showing birefringence under polarization microscopy. However, Congo red staining is tedious and costly to perform, and prone to false diagnoses due to variations in amyloid amount, staining quality and manual examination of tissue under a polarization microscope. We report virtual birefringence imaging and virtual Congo red staining of label-free human tissue to show that a single neural network can transform autofluorescence images of label-free tissue into brightfield and polarized microscopy images, matching their histochemically stained versions. Blind testing with quantitative metrics and pathologist evaluations on cardiac tissue showed that our virtually stained polarization and brightfield images highlight amyloid patterns in a consistent manner, mitigating challenges due to variations in chemical staining quality and manual imaging processes in the clinical workflow.

Identifiants

pubmed: 39266547
doi: 10.1038/s41467-024-52263-z
pii: 10.1038/s41467-024-52263-z
doi:

Substances chimiques

Amyloid 0
Congo Red 3U05FHG59S

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

7978

Informations de copyright

© 2024. The Author(s).

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Auteurs

Xilin Yang (X)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA.

Bijie Bai (B)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA.

Yijie Zhang (Y)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA.

Musa Aydin (M)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.
Department of Computer Engineering, Fatih Sultan Mehmet Vakif University, Istanbul, 34038, Turkey.

Yuzhu Li (Y)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA.

Sahan Yoruc Selcuk (SY)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA.

Paloma Casteleiro Costa (P)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA.

Zhen Guo (Z)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA.

Gregory A Fishbein (GA)

Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at the University of California, Los Angeles, CA, 90095, USA.

Karine Atlan (K)

Department of Pathology, Hadassah Hebrew University Medical Center, Jerusalem, 91120, Israel.

William Dean Wallace (WD)

Department of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA.

Nir Pillar (N)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA. npillar@g.ucla.edu.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA. npillar@g.ucla.edu.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA. npillar@g.ucla.edu.

Aydogan Ozcan (A)

Electrical and Computer Engineering Department, University of California, Los Angeles, CA, 90095, USA. ozcan@ucla.edu.
Bioengineering Department, University of California, Los Angeles, CA, 90095, USA. ozcan@ucla.edu.
California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, 90095, USA. ozcan@ucla.edu.
Department of Surgery, University of California, Los Angeles, CA, 90095, USA. ozcan@ucla.edu.

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