High-throughput drug screening identifies novel therapeutics for Low Grade Serous Ovarian Carcinoma.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
19 Sep 2024
19 Sep 2024
Historique:
received:
18
03
2024
accepted:
06
09
2024
medline:
20
9
2024
pubmed:
20
9
2024
entrez:
19
9
2024
Statut:
epublish
Résumé
Low grade serous carcinoma (LGSOC) is a rare epithelial ovarian cancer with unique molecular characteristics compared to the more common tubo-ovarian high-grade serous ovarian carcinoma. Pivotal clinical trials guiding the management of epithelial ovarian cancer lack sufficient cases of LGSOC for meaningful subgroup analysis, hence overall findings cannot be extrapolated to rarer chemo-resistant subtypes such as LGSOC. Furthermore, there is a need for more effective therapies for the treatment of relapsed disease, as treatment options are limited. To address this, we conducted the largest quantitative high-throughput drug screening effort (n = 3436 compounds) in 12 patient-derived LGSOC cell lines and one normal ovary cell line to identify unexplored therapeutic avenues. Using a combination of high-throughput robotics, high-content imaging and novel data analysis pipelines, our data set identified 60 high and 19 moderate confidence hits which induced cancer cell specific cytotoxicity at the lowest compound dose assessed (0.1 µM). We also revealed a series of known (mTOR/PI3K/AKT) and novel (EGFR and MDM2-p53) drug classes in which LGSOC cell lines showed demonstrable susceptibility to.
Identifiants
pubmed: 39300112
doi: 10.1038/s41597-024-03869-x
pii: 10.1038/s41597-024-03869-x
doi:
Substances chimiques
Antineoplastic Agents
0
Types de publication
Journal Article
Dataset
Langues
eng
Sous-ensembles de citation
IM
Pagination
1024Informations de copyright
© 2024. The Author(s).
Références
Oswald, A. J. & Gourley, C. Low-grade epithelial ovarian cancer: a number of distinct clinical entities? Curr Opin Oncol 27, 412–419 (2015).
doi: 10.1097/CCO.0000000000000216
pubmed: 26241347
Gershenson, D. M. et al. Recurrent low-grade serous ovarian carcinoma is relatively chemoresistant. Gynecol Oncol 114, 48–52 (2009).
doi: 10.1016/j.ygyno.2009.03.001
pubmed: 19361839
Ali, R. H., Kalloger, S. E., Santos, J. L., Swenerton, K. D. & Gilks, C. B. Stage II to IV low-grade serous carcinoma of the ovary is associated with a poor prognosis: a clinicopathologic study of 32 patients from a population-based tumor registry. Int J Gynecol Pathol 32, 529–535 (2013).
doi: 10.1097/PGP.0b013e31827630eb
pubmed: 24071867
Gershenson, D. M. et al. Impact of Age and Primary Disease Site on Outcome in Women With Low-Grade Serous Carcinoma of the Ovary or Peritoneum: Results of a Large Single-Institution Registry of a Rare Tumor. J Clin Oncol 33, 2675–2682 (2015).
doi: 10.1200/JCO.2015.61.0873
pubmed: 26195696
pmcid: 4534528
Gershenson, D. M. et al. Hormonal Maintenance Therapy for Women With Low-Grade Serous Cancer of the Ovary or Peritoneum. J Clin Oncol 35, 1103–1111 (2017).
doi: 10.1200/JCO.2016.71.0632
pubmed: 28221866
pmcid: 5455356
Llaurado Fernandez, M. et al. Hormone receptor expression and outcomes in low-grade serous ovarian carcinoma. Gynecol Oncol 157, 12–20 (2020).
doi: 10.1016/j.ygyno.2019.11.029
pubmed: 31954537
Gershenson, D. M. et al. Hormonal therapy for recurrent low-grade serous carcinoma of the ovary or peritoneum. Gynecol Oncol 125, 661–666 (2012).
doi: 10.1016/j.ygyno.2012.02.037
pubmed: 22406638
pmcid: 4405157
Malpica, A. et al. Grading ovarian serous carcinoma using a two-tier system. Am J Surg Pathol 28, 496–504 (2004).
doi: 10.1097/00000478-200404000-00009
pubmed: 15087669
National Comprehensive Cancer Network. NCCN Guidelines: Ovarian cancer/Fallopian tube cancer/primary peritoneal cancer. Version 2. (2023).
Gershenson, D. M. et al. Clinical behavior of stage II-IV low-grade serous carcinoma of the ovary. Obstet Gynecol 108, 361–368 (2006).
doi: 10.1097/01.AOG.0000227787.24587.d1
pubmed: 16880307
Grisham, R. N. et al. Low-grade serous ovarian cancer: expert consensus report on the state of the science. Int J Gynecol Cancer 33, 1331–1344 (2023).
doi: 10.1136/ijgc-2023-004610
pubmed: 37591609
pmcid: 10511962
Grabowski, J. P. et al. Operability and chemotherapy responsiveness in advanced low-grade serous ovarian cancer. An analysis of the AGO Study Group metadatabase. Gynecol Oncol 140, 457–462 (2016).
doi: 10.1016/j.ygyno.2016.01.022
pubmed: 26807488
Schmeler, K. M. et al. Neoadjuvant chemotherapy for low-grade serous carcinoma of the ovary or peritoneum. Gynecol Oncol 108, 510–514 (2008).
doi: 10.1016/j.ygyno.2007.11.013
pubmed: 18155273
Cheasley, D. et al. Genomic analysis of low-grade serous ovarian carcinoma to identify key drivers and therapeutic vulnerabilities. J Pathol 253, 41–54 (2021).
doi: 10.1002/path.5545
pubmed: 32901952
Hunter, S. M. et al. Molecular profiling of low grade serous ovarian tumours identifies novel candidate driver genes. Oncotarget 6, 37663–37677 (2015).
doi: 10.18632/oncotarget.5438
pubmed: 26506417
pmcid: 4741956
Singer, G. et al. Mutations in BRAF and KRAS characterize the development of low-grade ovarian serous carcinoma. J Natl Cancer Inst 95, 484–486 (2003).
doi: 10.1093/jnci/95.6.484
pubmed: 12644542
Farley, J. et al. Selumetinib in women with recurrent low-grade serous carcinoma of the ovary or peritoneum: an open-label, single-arm, phase 2 study. Lancet Oncol 14, 134–140 (2013).
doi: 10.1016/S1470-2045(12)70572-7
pubmed: 23261356
pmcid: 3627419
Gershenson, D. M. et al. LBA61 - A randomized phase II/III study to assess the efficacy of trametinib in patients with recurrent or progressive low-grade serous ovarian or peritoneal cancer. Annals of Oncology 30, v897–v898 (2019).
doi: 10.1093/annonc/mdz394.058
Monk, B. J. et al. MILO/ENGOT-ov11: Binimetinib Versus Physician’s Choice Chemotherapy in Recurrent or Persistent Low-Grade Serous Carcinomas of the Ovary, Fallopian Tube, or Primary Peritoneum. J Clin Oncol 38, 3753–3762 (2020).
doi: 10.1200/JCO.20.01164
pubmed: 32822286
pmcid: 7655017
Perera, N. & Hikkaduwa Koralege, R. S. in Encyclopedia of Toxicology (Fourth Edition) (ed Philip Wexler) 297–301 (Academic Press, 2024).
Hunter, S. et al. Molecular profiling of low grade serous ovarian tumours identifies novel candidate driver genes. Oncotarget 6 (2015).
Etemadmoghadam, D. et al. EIF1AX and NRAS Mutations Co-occur and Cooperate in Low-Grade Serous Ovarian Carcinomas. Cancer Res 77, 4268–4278 (2017).
doi: 10.1158/0008-5472.CAN-16-2224
pubmed: 28646021
Fernandez, M. L. et al. Markers of MEK inhibitor resistance in low-grade serous ovarian cancer: EGFR is a potential therapeutic target. Cancer Cell Int 19, 10 (2019).
doi: 10.1186/s12935-019-0725-1
pubmed: 30636931
pmcid: 6325847
Fernandez, M. L. et al. Differences in MEK inhibitor efficacy in molecularly characterized low-grade serous ovarian cancer cell lines. Am J Cancer Res 6, 2235–2251 (2016).
pubmed: 27822414
pmcid: 5088288
Shrestha, R. et al. Multiomics Characterization of Low-Grade Serous Ovarian Carcinoma Identifies Potential Biomarkers of MEK Inhibitor Sensitivity and Therapeutic Vulnerability. Cancer Res 81, 1681–1694 (2021).
doi: 10.1158/0008-5472.CAN-20-2222
pubmed: 33441310
Zhou, Y. et al. TTD: Therapeutic Target Database describing target druggability information. Nucleic Acids Res 52, D1465–D1477 (2024).
doi: 10.1093/nar/gkad751
pubmed: 37713619
Knox, C. et al. DrugBank 6.0: the DrugBank Knowledgebase for 2024. Nucleic Acids Res 52, D1265–D1275 (2024).
doi: 10.1093/nar/gkad976
pubmed: 37953279
Stirling, D. R. et al. CellProfiler 4: improvements in speed, utility and usability. BMC Bioinformatics 22, 433 (2021).
doi: 10.1186/s12859-021-04344-9
pubmed: 34507520
pmcid: 8431850
Mpindi, J. P. et al. Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data. Bioinformatics 31, 3815–3821 (2015).
doi: 10.1093/bioinformatics/btv455
pubmed: 26254433
pmcid: 4653387
Pishas, K. I. et al BioStudies. https://identifiers.org/biostudies:S-BIAD1069 (2024).
Gray, H. J. et al. Extraordinary clinical response to ibrutinib in low-grade ovarian cancer guided by organoid drug testing. NPJ Precis Oncol 7, 45 (2023).
doi: 10.1038/s41698-023-00379-8
pubmed: 37202426
pmcid: 10195827
Murumagi, A. et al. Drug response profiles in patient-derived cancer cells across histological subtypes of ovarian cancer: real-time therapy tailoring for a patient with low-grade serous carcinoma. Br J Cancer 128, 678–690 (2023).
doi: 10.1038/s41416-022-02067-z
pubmed: 36476658
Falchook, G. et al. Alisertib in Combination With Weekly Paclitaxel in Patients With Advanced Breast Cancer or Recurrent Ovarian Cancer: A Randomized Clinical Trial. JAMA Oncol 5, e183773 (2019).
doi: 10.1001/jamaoncol.2018.3773
pubmed: 30347019
Lauren P. et al. A pilot phase II study of neoadjuvant fulvestrant plus abemaciclib in women with advanced low-grade serous carcinoma. J Clin Oncol. 2022;40(suppl 16):5522.
Dall’Acqua, A. et al. Inhibition of CDK4/6 as Therapeutic Approach for Ovarian Cancer Patients: Current Evidences and Future Perspectives. Cancers (Basel) 13 (2021).
Hollis, R. L. et al. High throughput screening identifies dasatinib as synergistic with trametinib in low grade serous ovarian carcinoma. Gynecol Oncol 186, 42–52 (2024).
doi: 10.1016/j.ygyno.2024.03.029
pubmed: 38582027
Da-Anoy, A. et al. Molecular Surrogate Subtypes of Ovarian and Peritoneal Low-grade Serous Carcinoma. Int J Gynecol Pathol (2024).