The past, present, and future of the brain imaging data structure (BIDS).

data organization neuroimaging neuroinformatics standards

Journal

Imaging neuroscience (Cambridge, Mass.)
ISSN: 2837-6056
Titre abrégé: Imaging Neurosci (Camb)
Pays: United States
ID NLM: 9918663686606676

Informations de publication

Date de publication:
01 Mar 2024
Historique:
received: 11 09 2023
revised: 08 01 2024
accepted: 09 01 2024
medline: 23 9 2024
pubmed: 23 9 2024
entrez: 23 9 2024
Statut: epublish

Résumé

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

Identifiants

DOI: 10.1162/imag_a_00103 PMID: 39308505 PMC: PMC11415029
pubmed: 39308505
doi: 10.1162/imag_a_00103
pii: imag_a_00103
pmc: PMC11415029
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

1-19

Informations de copyright

© 2024 Massachusetts Institute of Technology. Published under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.

Déclaration de conflit d'intérêts

Gaia Rizzo is an employee of Invicro. No other authors have competing interests to declare.

Auteurs

Russell A Poldrack (RA)

Department of Psychology, Stanford University, Stanford, CA, United States.

Christopher J Markiewicz (CJ)

Department of Psychology, Stanford University, Stanford, CA, United States.

Stefan Appelhoff (S)

Max Planck Institute for Human Development, Berlin, Germany.

Yoni K Ashar (YK)

University of Colorado Anschutz Medical Campus, Aurora, CO, United States.

Tibor Auer (T)

School of Psychology, University of Surrey, Guildford, United Kingdom.
Artificial Intelligence and Informatics Group, Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom.

Sylvain Baillet (S)

McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada.

Shashank Bansal (S)

Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States.

Leandro Beltrachini (L)

Cardiff University Brain Research Imaging Centre (CUBRIC), School of Physics and Astronomy, Cardiff University, Wales, United Kingdom.

Christian G Benar (CG)

Aix Marseille Université, INSERM, INS, Inst Neurosci Syst, Marseille, France.

Giacomo Bertazzoli (G)

Neurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.
Center for Mind/Brain Sciences - CIMeC, University of Trento, Rovereto, TN, Italy.
Brigham and Women's Hospital, Boston, MA, United States.
Massachusetts General Hospital, Boston, MA, United States.
Harvard Medical School, Boston, MA, United States.

Suyash Bhogawar (S)

Rackspace Technology, San Antonio, TX, United States.

Ross W Blair (RW)

Department of Psychology, Stanford University, Stanford, CA, United States.

Marta Bortoletto (M)

Neurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.

Mathieu Boudreau (M)

NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.

Teon L Brooks (TL)

Department of Psychology, Stanford University, Stanford, CA, United States.

Vince D Calhoun (VD)

Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory, Atlanta, GA, United States.

Filippo Maria Castelli (FM)

European Laboratory for Non-Linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino, Italy.
Bioretics srl, Cesena, Italy.

Patricia Clement (P)

Department of Medical Imaging, Ghent University Hospital, Ghent, Belgium.
Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.

Alexander L Cohen (AL)

Department of Neurology, Boston Children's Hospital, Boston, MA, United States.

Julien Cohen-Adad (J)

NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.

Sasha D'Ambrosio (S)

Department of Health Sciences, Università degli Studi di Milano, Milan, Italy.
Department of Clinical and Experimental Epilepsy, University College London, London, United Kingdom.

Gilles de Hollander (G)

Zurich Center for Neuroeconomics, Department of Economics, University of Zurich, Zurich, Switzerland.

María de la Iglesia-Vayá (M)

Center for Biomedical Research in Mental Health Network (CIBERSAM), UMIB-FISABIO, Valencia, Spain.

Alejandro de la Vega (A)

The University of Texas at Austin, Austin, TX, United States.

Arnaud Delorme (A)

SCCN, University of California, San Diego, La Jolla, CA, United States.

Orrin Devinsky (O)

Department of Neurology, NYU Langone Medical Center, New York, NY, United States.

Dejan Draschkow (D)

Department of Experimental Psychology, University of Oxford, Oxford, United Kingdom.

Eugene Paul Duff (EP)

UK Dementia Research Institute, Department of Brain Sciences, Imperial College London, London, United Kingdom.

Elizabeth DuPre (E)

Department of Psychology, Stanford University, Stanford, CA, United States.

Eric Earl (E)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States.

Oscar Esteban (O)

Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland.

Franklin W Feingold (FW)

Department of Psychology, Stanford University, Stanford, CA, United States.

Guillaume Flandin (G)

Wellcome Centre for Human Neuroimaging, University College London, London, England, United Kingdom.

Anthony Galassi (A)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States.

Giuseppe Gallitto (G)

Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Department of Neurology, University Medicine Essen, Essen, Germany.

Melanie Ganz (M)

Department of Computer Science, University of Copenhagen, Copenhagen, Denmark.
Neurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark.

Rémi Gau (R)

Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada.

James Gholam (J)

Cardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Wales, United Kingdom.

Satrajit S Ghosh (SS)

Massachusetts Institute of Technology, Cambridge, MA, United States.

Alessio Giacomel (A)

Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, England, United Kingdom.

Ashley G Gillman (AG)

The Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Townsville, Queensland, Australia.

Padraig Gleeson (P)

Department of Neuroscience, Physiology and Pharmacology, University College London, London, England, United Kingdom.

Alexandre Gramfort (A)

Inria, CEA, Université Paris-Saclay, Palaiseau, France.

Samuel Guay (S)

Université de Montréal, Montréal, QC, Canada.

Giacomo Guidali (G)

Department of Psychology & NeuroMI - Milan Centre for Neuroscience, University of Milano-Bicocca, Milan, Italy.

Yaroslav O Halchenko (YO)

Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, United States.

Daniel A Handwerker (DA)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States.

Nell Hardcastle (N)

Department of Psychology, Stanford University, Stanford, CA, United States.

Peer Herholz (P)

Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada.

Dora Hermes (D)

Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, United States.

Christopher J Honey (CJ)

Department of Psychological & Brain Sciences, Johns Hopkins University, Baltimore, MD, United States.

Robert B Innis (RB)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States.

Horea-Ioan Ioanas (HI)

Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, United States.

Andrew Jahn (A)

Functional MRI Laboratory, University of Michigan, Ann Arbor, MI, United States.

Agah Karakuzu (A)

NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.

David B Keator (DB)

Change Your Brain Change Your Life Foundation, Costa Mesa, CA, United States.
Amen Clinics, Costa Mesa, CA, United States.
Department of Psychiatry and Human Behavior, School of Medicine, University of California, Irvine, CA, United States.

Gregory Kiar (G)

Center for Data Analytics, Innovation, and Rigor, Child Mind Institute, New York, NY, United States.

Balint Kincses (B)

Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Department of Neurology, University Medicine Essen, Essen, Germany.

Angela R Laird (AR)

Department of Physics, Florida International University, Miami, FL, United States.

Jonathan C Lau (JC)

Department of Clinical Neurological Sciences, Western University, London, Ontario, Canada.

Alberto Lazari (A)

Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.

Jon Haitz Legarreta (JH)

Department of Radiology, Brigham and Women's Hospital, Mass General Brigham/Harvard Medical School, Boston, MA, United States.

Adam Li (A)

Columbia University, New York, NY, United States.

Xiangrui Li (X)

Center for Cognitive and Behavioral Brain Imaging, The Ohio State University, Columbus, OH, United States.

Bradley C Love (BC)

University College London, London, United Kingdom.

Hanzhang Lu (H)

Johns Hopkins University School of Medicine, Baltimore, MD, United States.

Eleonora Marcantoni (E)

School for Psychology and Neuroscience and Centre for Cognitive Neuroimaging, University of Glasgow, Glasgow, Scotland.

Camille Maumet (C)

Inria, Univ Rennes, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U 1228, Rennes, France.

Giacomo Mazzamuto (G)

National Research Council - National Institute of Optics (CNR-INO), Florence, Italy.

Steven L Meisler (SL)

Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA, United States.

Mark Mikkelsen (M)

Department of Radiology, Weill Cornell Medicine, New York, NY, United States.

Henk Mutsaerts (H)

Radiology and Nuclear Medicine, Vrije Universiteit Amsterdam, Amsterdam UMC location VUmc, Amsterdam, The Netherlands.
Amsterdam Neuroscience, Brain Imaging, Amsterdam, The Netherlands.

Thomas E Nichols (TE)

Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, United Kingdom.

Aki Nikolaidis (A)

Center for the Developing Brain, Child Mind Institute, New York, NY, United States.

Gustav Nilsonne (G)

Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.
Swedish National Data Service, Gothenburg University, Gothenburg, Sweden.

Guiomar Niso (G)

Instituto Cajal, CSIC, Madrid, Spain.

Martin Norgaard (M)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States.
Department of Computer Science, University of Copenhagen, Copenhagen, Denmark.

Thomas W Okell (TW)

Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.

Robert Oostenveld (R)

Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands.
NatMEG, Karolinska Institutet, Stockholm, Sweden.

Eduard Ort (E)

Department of Biological Psychology of Decision Making, Heinrich Heine University, Düsseldorf, Germany.

Patrick J Park (PJ)

Western University, London, Ontario, Canada.

Mateusz Pawlik (M)

Paris-Lodron-University of Salzburg, Department of Psychology, Centre for Cognitive Neuroscience, Salzburg, Austria.

Cyril R Pernet (CR)

Neurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark.

Franco Pestilli (F)

The University of Texas at Austin, Austin, TX, United States.

Jan Petr (J)

Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Dresden, Germany.

Christophe Phillips (C)

GIGA CRC in vivo imaging, Liège University, Liege, Belgium.

Jean-Baptiste Poline (JB)

Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada.

Luca Pollonini (L)

Department of Engineering Technology, University of Houston, Houston, TX, United States.
Basque Center on Cognition, Brain and Language, Donostia-San Sebastián, Spain.

Pradeep Reddy Raamana (PR)

University of Pittsburgh, Pittsburgh, PA, United States.

Petra Ritter (P)

Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Department of Neurology with Experimental Neurology, Charité, Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany.
Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience, Berlin, Germany.
Einstein Center for Neuroscience Berlin, Berlin, Germany.
Einstein Center Digital Future, Berlin, Germany.

Gaia Rizzo (G)

Invicro, London, United Kingdom.
Division of Brain Sciences, Imperial College London, London, United Kingdom.

Kay A Robbins (KA)

Department of Computer Science, University of Texas at San Antonio, San Antonio, TX, United States.

Alexander P Rockhill (AP)

Department of Neurosurgery, Oregon Health & Science University, Portland, OR, United States.

Christine Rogers (C)

McGill Centre for Integrative Neuroscience (MCIN), Montréal Neurological Institute, McGill University, Montréal, QC, Canada.

Ariel Rokem (A)

Department of Psychology and eScience Institute, University of Washington, Seattle, WA, United States.

Chris Rorden (C)

Department of Psychology, University of South Carolina, Columbia, SC, United States.

Alexandre Routier (A)

Inria, Institut du Cerveau - Paris Brain Institute, Paris, France.

Jose Manuel Saborit-Torres (JM)

Center for Biomedical Research in Mental Health Network (CIBERSAM), UMIB-FISABIO, Valencia, Spain.

Taylor Salo (T)

Lifespan Informatics and Neuroimaging Center (PennLINC), Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Lifespan Brain Institute (LiBI) of Penn Medicine and Children's Hospital of Philadelphia (CHOP), Philadelphia, PA, United States.

Michael Schirner (M)

Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Department of Neurology with Experimental Neurology, Charité, Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany.
Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience, Berlin, Germany.
Einstein Center for Neuroscience Berlin, Berlin, Germany.
Einstein Center Digital Future, Berlin, Germany.

Robert E Smith (RE)

The Florey Institute of Neuroscience and Mental Health, Heidelberg, Victoria, Australia.
The Florey Department of Neuroscience and Mental Heath, The University of Melbourne, Parkville, Victoria, Australia.

Tamas Spisak (T)

Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Institute for Diagnostic and Interventional Radiology and Neuroradiology, University Medicine Essen, Essen, Germany.

Julia Sprenger (J)

Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France.

Nicole C Swann (NC)

Department of Human Physiology, University of Oregon, Eugene, OR, United States.

Martin Szinte (M)

Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France.

Sylvain Takerkart (S)

Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France.

Bertrand Thirion (B)

Inria, CEA, Université Paris-Saclay, Palaiseau, France.

Adam G Thomas (AG)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States.

Sajjad Torabian (S)

University of California, Irvine, CA, United States.

Gael Varoquaux (G)

Inria, Université Paris Saclay, Saclay, France.

Bradley Voytek (B)

Department of Cognitive Science, Halıcıoğlu Data Science Institute, and Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States.

Julius Welzel (J)

Kiel University, Kiel, Germany.

Martin Wilson (M)

Centre for Human Brain Health and School of Psychology, University of Birmingham, Birmingham, United Kingdom.

Tal Yarkoni (T)

Google X. Mountain View, CA, United States.

Krzysztof J Gorgolewski (KJ)

Department of Psychology, Stanford University, Stanford, CA, United States.

Classifications MeSH