The Role of Double Heterozygotes of SLC3A1 and SLC7A9 in the Prevalence of Cystine Stones.

Cystine Stone Cystinuria Double Heterozygote Heterozygosity Population Genetics Synergistic

Journal

Genetics in medicine : official journal of the American College of Medical Genetics
ISSN: 1530-0366
Titre abrégé: Genet Med
Pays: United States
ID NLM: 9815831

Informations de publication

Date de publication:
21 Sep 2024
Historique:
received: 24 04 2024
revised: 17 09 2024
accepted: 18 09 2024
medline: 24 9 2024
pubmed: 24 9 2024
entrez: 24 9 2024
Statut: aheadofprint

Résumé

Cystine stones, an autosomal recessive disorder caused by cystinuria, result from pathogenic variants of SLC3A1 and SLC7A9. Previous publications revealed clinical prevalence is higher than genetically predicted prevalence. Heterozygous carriers in either gene are not stone formers. However, double heterozygotes (DH), individuals with two heterozygous pathogenic variants in both genes, were never evaluated and may explain the gap between clinical and genetic prevalence. Due to the rarity of the condition, direct clinical observation is impractical. We perform this population study as a surrogate by identifying the observed DH, deriving the theoretical/expected DH, and testing the null hypothesis (NH) that the observed DH frequency is equal or greater than expected. This NH biologically correlates to DH are asymptomatic and without cystine stone. Using the 1000 Genome Database, we identified 0 DH. We derived the theoretical/expected DH with Hardy-Weinberg Equilibrium and Mendel's law of independent assortment, as 4.94x10-s. Population proportion test revealed Z= -0.353, and p= 0.362, the NH cannot be rejected. Statistical testing does not support that DH are symptomatic, i.e. DH of SLC3A1 and SLC7A9 may not present with cystine stone, and other factors responsible for the gap that current genetics knowledge cannot explain.

Identifiants

pubmed: 39315525
pii: S1098-3600(24)00215-6
doi: 10.1016/j.gim.2024.101281
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

101281

Informations de copyright

Copyright © 2024. Published by Elsevier Inc.

Auteurs

Chen-Han Wilfred Wu (CW)

Department of Urology and Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine and University Hospitals, Cleveland, Ohio, USA. Electronic address: wilfred.wu@case.edu.

Ishita Patel (I)

Department of Urology and Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine and University Hospitals, Cleveland, Ohio, USA.

Katreya Lovrenert (K)

Department of Urology and Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine and University Hospitals, Cleveland, Ohio, USA.

Brian Eisner (B)

Massachusetts General Hospital/Harvard Medical School, Boston, Massachusetts, USA.

Naomi Meeks (N)

Division of Clinical Genetics and Metabolism, Department of Pediatrics, Children's Hospital Colorado and University of Colorado, Aurora, Colorado, USA.

Anne Chun-Hui Tsai (A)

Section of Genetics, Department of Pediatrics, University of Illinois Chicago, Chicago, Illinois, USA.

Michelle Baum (M)

Division of Nephrology, Boston Children's Hospital/Harvard Medical School, Boston, Massachusetts, USA.

Gerard Berry (G)

Division of Genetics and Genomics Boston Children's Hospital/Harvard Medical School, Boston, Massachusetts, USA.

Fredrick R Schumacher (FR)

Department of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, OH.

Classifications MeSH