Renal Cell Carcinoma Discrimination through Attenuated Total Reflection Fourier Transform Infrared Spectroscopy of Dried Human Urine and Machine Learning Techniques.
Humans
Spectroscopy, Fourier Transform Infrared
/ methods
Male
Carcinoma, Renal Cell
/ urine
Female
Kidney Neoplasms
/ urine
Middle Aged
Machine Learning
Aged
Principal Component Analysis
Adult
Discriminant Analysis
Biomarkers, Tumor
/ urine
Support Vector Machine
Creatinine
/ urine
Urinalysis
/ methods
attenuated total reflection Fourier transform infrared
dried urine
linear discrimination analysis–principal component analysis
machine learning
renal cell carcinoma
support vector machine
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
11 Sep 2024
11 Sep 2024
Historique:
received:
14
08
2024
revised:
08
09
2024
accepted:
10
09
2024
medline:
28
9
2024
pubmed:
28
9
2024
entrez:
28
9
2024
Statut:
epublish
Résumé
Renal cell carcinoma (RCC) is the sixth most common cancer in men and is often asymptomatic, leading to incidental detection in advanced disease stages that are associated with aggressive histology and poorer outcomes. Various cancer biomarkers are found in urine samples from patients with RCC. In this study, we propose to investigate the use of Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR) on dried urine samples for distinguishing RCC. We analyzed dried urine samples from 49 patients with RCC, confirmed by histopathology, and 39 healthy donors using ATR-FTIR spectroscopy. The vibrational bands of the dried urine were identified by comparing them with spectra from dried artificial urine, individual urine components, and dried artificial urine spiked with urine components. Urea dominated all spectra, but smaller intensity peaks, corresponding to creatinine, phosphate, and uric acid, were also identified. Statistically significant differences between the FTIR spectra of the two groups were obtained only for creatinine, with lower intensities for RCC cases. The discrimination of RCC was performed through Principal Component Analysis combined with Linear Discriminant Analysis (PCA-LDA) and Support Vector Machine (SVM). Using PCA-LDA, we achieved a higher discrimination accuracy (82%) (using only six Principal Components to avoid overfitting), as compared to SVM (76%). Our results demonstrate the potential of urine ATR-FTIR combined with machine learning techniques for RCC discrimination. However, further studies, especially of other urological diseases, must validate this approach.
Identifiants
pubmed: 39337322
pii: ijms25189830
doi: 10.3390/ijms25189830
pii:
doi:
Substances chimiques
Biomarkers, Tumor
0
Creatinine
AYI8EX34EU
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Ministerul Cercetării și Inovării
ID : PN-III-P2-2.1-PED-2021-4175