Optimized protocol for the multi-omics processing of cryopreserved human kidney tissue.

RNAlater biobanking kidney tissue multi-omics single nucleus RNA sequencing

Journal

American journal of physiology. Renal physiology
ISSN: 1522-1466
Titre abrégé: Am J Physiol Renal Physiol
Pays: United States
ID NLM: 100901990

Informations de publication

Date de publication:
03 Oct 2024
Historique:
medline: 4 10 2024
pubmed: 4 10 2024
entrez: 3 10 2024
Statut: aheadofprint

Résumé

Biobanking of tissue from clinically obtained kidney biopsies for later use with multi-omic and imaging techniques is an inevitable step to overcome the need of disease model systems and towards translational medicine. Hence, collection protocols ensuring integration into daily clinical routines using preservation media not requiring liquid nitrogen but instantly preserving kidney tissue for clinical and scientific analyses are of paramount importance. Thus, we modified a robust single nucleus dissociation protocol for kidney tissue stored snap frozen or in the preservation media RNA

Identifiants

pubmed: 39361723
doi: 10.1152/ajprenal.00404.2023
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : FOR5068
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : SFB1286
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : SFB1192
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : RI 2811/1-1 and RI 2811/2-1,FOR2743,and SFB1192-project B10
Organisme : Novo Nordisk (Novo Nordisk Global)
ID : NNF19OC0056043
Organisme : EC | Horizon 2020 Framework Programme (H2020)
ID : 754513
Organisme : Bundesministerium für Bildung und Forschung (BMBF)
ID : 01GM1518A; STOP-FSGS
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : CRC1192,HU 1016/8-2,HU 1016/ 12-1
Organisme : Bundesministerium für Bildung und Forschung (BMBF)
ID : (STOP-FSGS- 01GM1901C
Organisme : Else Kröner-Fresenius-Stiftung (EKFS)
ID : 2021_EKMS.26
Organisme : EC | Horizon 2020 Framework Programme (H2020)
ID : Beat-DKD (No 115974)
Organisme : Eva Luise und Horst Köhler Stiftung/EKFS
ID : Project No: 2019_KollegSE.04
Organisme : Bundesministerium für Bildung und Forschung (BMBF)
ID : 01EK2105D UPTAKE
Organisme : University Medical Center Hamburg-Eppendorf
ID : postdoctoral stipend
Organisme : University Medical Center Hamburg-Eppendorf
ID : 3R initative
Organisme : Deutsche Forschungsgemeinschaft (DFG)
ID : SFB1192 B8

Auteurs

Sydney E Gies (SE)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Sonja Hänzelmann (S)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Dominik Kylies (D)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Moritz Lassé (M)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Simon Lagies (S)

Core Competence Metabolomics (Hilde-Mangold-Haus), University of Freiburg, Freiburg, Germany.

Fabian Hausmann (F)

Hamburg Center for Kidney Health, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Robin Khatri (R)

Hamburg Center for Kidney Health, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Nikolay Zolotarev (N)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Manuela Poets (M)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Tianran Zhang (T)

Institute of Medical Systems Biology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Fatih Demir (F)

Department of Biomedicine, Aarhus University, Aarhus, Denmark.

Anja M Billing (AM)

Department of Biomedicine, Aarhus University, Aarhus, Denmark.

Josephine Quaas (J)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Elisabeth Meister (E)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Jonas Engesser (J)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Anne K Mühlig (AK)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Shun Lu (S)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Shuya Liu (S)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Silvia Chilla (S)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Ilka Edenhofer (I)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Jan Czogalla (J)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Fabian Braun (F)

III. Department of medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Bernd Kammerer (B)

Core Competence Metabolomics (Hilde-Mangold-Haus), University of Freiburg, Freiburg, Germany.

Victor G Puelles (VG)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Stefan Bonn (S)

Hamburg Center for Kidney Health, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Markus M Rinschen (MM)

Department of Biomedicine and Aarhus Institute of Advanced Studies (AIAS), University Medical Center Hamburg-Eppendorf, Aarhus, Denmark.

Maja Lindenmeyer (M)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Tobias B Huber (TB)

III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Classifications MeSH