A Concise Guide to Essential R Packages for Analyses of DNA, RNA, and Proteins.

Genomics R package proteomics transcriptomics

Journal

Molecules and cells
ISSN: 0219-1032
Titre abrégé: Mol Cells
Pays: United States
ID NLM: 9610936

Informations de publication

Date de publication:
05 Oct 2024
Historique:
received: 06 08 2024
revised: 30 09 2024
accepted: 30 09 2024
medline: 8 10 2024
pubmed: 8 10 2024
entrez: 7 10 2024
Statut: aheadofprint

Résumé

R is widely regarded as unrivalled by other high-level programming languages for its statistical functions. The popularity of R as a statistical language has led many to overlook its applications outside the statistical realm. In this brief review, we present a list of R packages for supporting projects that entail analyses of DNA, RNA, and proteins. These R packages span the gamut of important molecular techniques, from routine quantitative PCR and Western blotting to high-throughput sequencing and proteomics generating very large datasets. The text-mining power of R can also be harnessed to facilitate literature reviews and predict future research trends and avenues. We encourage researchers to make full use of R in their work, given the versatility of the language, as well as its straightforward syntax which eases the initial learning curve.

Identifiants

pubmed: 39374792
pii: S1016-8478(24)00145-6
doi: 10.1016/j.mocell.2024.100120
pii:
doi:

Types de publication

Letter

Langues

eng

Sous-ensembles de citation

IM

Pagination

100120

Informations de copyright

Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Eng Wee Chua (EW)

Centre for Drug and Herbal Development, Faculty of Pharmacy, Universiti Kebangsaan Malaysia, Kuala Lumpur, Malaysia. Electronic address: cew85911@ukm.edu.my.

Der Jiun Ooi (J)

Department of Preclinical Sciences, Faculty of Dentistry, MAHSA University, Jenjarom, Selangor, Malaysia.

Nor Azlan Nor Muhammad (NAN)

Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia.

Classifications MeSH