The conserved genetic program of male germ cells uncovers ancient regulators of human spermatogenesis.


Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
10 Oct 2024
Historique:
medline: 11 10 2024
pubmed: 11 10 2024
entrez: 10 10 2024
Statut: epublish

Résumé

Male germ cells share a common origin across animal species, therefore they likely retain a conserved genetic program that defines their cellular identity. However, the unique evolutionary dynamics of male germ cells coupled with their widespread leaky transcription pose significant obstacles to the identification of the core spermatogenic program. Through network analysis of the spermatocyte transcriptome of vertebrate and invertebrate species, we describe the conserved evolutionary origin of metazoan male germ cells at the molecular level. We estimate the average functional requirement of a metazoan male germ cell to correspond to the expression of approximately 10,000 protein-coding genes, a third of which defines a genetic scaffold of deeply conserved genes that has been retained throughout evolution. Such scaffold contains a set of 79 functional associations between 104 gene expression regulators that represent a core component of the conserved genetic program of metazoan spermatogenesis. By genetically interfering with the acquisition and maintenance of male germ cell identity, we uncover 161 previously unknown spermatogenesis genes and three new potential genetic causes of human infertility. These findings emphasize the importance of evolutionary history on human reproductive disease and establish a cross-species analytical pipeline that can be repurposed to other cell types and pathologies. Sperm are one of the most remarkable cells in nature, safely housing genetic information while also often moving through foreign environments in search of an egg to fertilize. Central for sexual reproduction, sperm cells of all shapes and sizes are found in animals, plants and even some species of fungi. You may be familiar with the streamlined structure of human sperm, for example, with its round head and flexible tail; but the sperm cells of fruit flies are about 300 times longer, and those found in mice have a hook-shaped head. Relatedly, the genes involved in the creation of reproductive cells often show rapid evolution, with their sequences quickly diverging between species. Due to the complexity of the network of genetic interactions taking place during sperm development, it has so far been difficult to fully isolate the ‘core program’ that governs sperm assembly and allows these cells to acquire their distinct identity. Whether this program could be conserved and shared across the tree of life, in particular, remains unclear. In response, Brattig-Correia, Almeida, Wyrwoll et al. first conducted analyses that allowed them to pinpoint the genes that were ‘switched on’ during the formation of human, mouse and fruit fly sperm. Assessing the ‘age’ of these genes showed that a large proportion had emerged early during evolution. Shared across the three species, these deeply conserved genes were shown to play a fundamental role in sperm cells acquiring and maintaining their identity. Further genetic experiments were conducted in fruit flies to refine these findings, highlighting a set of 161 previously unknown genes essential for sperm formation. By combining these results with genetic data from men unable to have children, Brattig-Correia, Almeida, Wyrwoll et al. were able to identify three new genes that could play a role in human infertility. This work emphasizes how our understanding of human reproductive development can benefit from examining this process in other species, and its evolutionary history. In particular, the knowledge gained from these comparative approaches could ultimately help develop better genetic tests and treatments for human infertility.

Autres résumés

Type: plain-language-summary (eng)
Sperm are one of the most remarkable cells in nature, safely housing genetic information while also often moving through foreign environments in search of an egg to fertilize. Central for sexual reproduction, sperm cells of all shapes and sizes are found in animals, plants and even some species of fungi. You may be familiar with the streamlined structure of human sperm, for example, with its round head and flexible tail; but the sperm cells of fruit flies are about 300 times longer, and those found in mice have a hook-shaped head. Relatedly, the genes involved in the creation of reproductive cells often show rapid evolution, with their sequences quickly diverging between species. Due to the complexity of the network of genetic interactions taking place during sperm development, it has so far been difficult to fully isolate the ‘core program’ that governs sperm assembly and allows these cells to acquire their distinct identity. Whether this program could be conserved and shared across the tree of life, in particular, remains unclear. In response, Brattig-Correia, Almeida, Wyrwoll et al. first conducted analyses that allowed them to pinpoint the genes that were ‘switched on’ during the formation of human, mouse and fruit fly sperm. Assessing the ‘age’ of these genes showed that a large proportion had emerged early during evolution. Shared across the three species, these deeply conserved genes were shown to play a fundamental role in sperm cells acquiring and maintaining their identity. Further genetic experiments were conducted in fruit flies to refine these findings, highlighting a set of 161 previously unknown genes essential for sperm formation. By combining these results with genetic data from men unable to have children, Brattig-Correia, Almeida, Wyrwoll et al. were able to identify three new genes that could play a role in human infertility. This work emphasizes how our understanding of human reproductive development can benefit from examining this process in other species, and its evolutionary history. In particular, the knowledge gained from these comparative approaches could ultimately help develop better genetic tests and treatments for human infertility.

Identifiants

pubmed: 39388236
doi: 10.7554/eLife.95774
pii: 95774
doi:
pii:

Banques de données

SRA
['SRX12573744', 'SRX12573745', 'SRX12573746', 'SRX12573747', 'SRX12573748', 'SRX12573749', 'SRX12573750', 'SRX12573751', 'SRX12573752']

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Fundação para a Ciência e a Tecnologia
ID : PTDC/MEC-AND/30221/2017
Organisme : Fundação para a Ciência e a Tecnologia
ID : EXPL/MEC-AND/0676/2021
Organisme : Fundação para a Ciência e a Tecnologia
ID : CEECIND/03345/2018
Organisme : Fundação para a Ciência e a Tecnologia
ID : PD/BD/114362/2016
Organisme : NIH HHS
ID : 1R01LM012832
Pays : United States
Organisme : National Science Foundation
ID : Research Traineeship grant 1735095
Organisme : Deutsche Forschungsgemeinschaft
ID : 329621271
Organisme : Ministry of Education, Singapore
ID : MOE2018-T2-2-053

Informations de copyright

© 2024, Brattig-Correia, Almeida, Wyrwoll et al.

Déclaration de conflit d'intérêts

RB, JA, MW, IJ, DS, CM, SD, LG, HS, NS, PP, AN, AL, JB, SL, MM, SK, MM, LR, FT, JB, PN No competing interests declared

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Auteurs

Rion Brattig-Correia (R)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.
Department of Systems Science and Industrial Engineering, Binghamton University, New York, United States.

Joana M Almeida (JM)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.
EvoReproMed Lab, Environmental Health Institute (ISAMB), Associate Laboratory TERRA, Faculty of Medicine, University of Lisbon, Lisbon, Portugal.

Margot Julia Wyrwoll (MJ)

Centre of Medical Genetics, Institute of Reproductive Genetics, University and University Hospital of Münster, Münster, Germany.

Irene Julca (I)

School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.

Daniel Sobral (D)

Associate Laboratory i4HB - Institute for Health and Bioeconomy, NOVA School of Science and Technology, NOVA University Lisbon, Lisbon, Portugal.
UCIBIO - Applied Molecular Biosciences Unit, Department of Life Sciences, NOVA School of Science and Technology, NOVA University Lisbon, Caparica, Portugal.

Chandra Shekhar Misra (CS)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.
Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.

Sara Di Persio (S)

Centre of Reproductive Medicine and Andrology, University Hospital Münster, Münster, Germany.

Leonardo Gastón Guilgur (LG)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

Hans-Christian Schuppe (HC)

Clinic of Urology, Pediatric Urology and Andrology, Justus-Liebig-University, Giessen, Germany.

Neide Silva (N)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

Pedro Prudêncio (P)

Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal.

Ana Nóvoa (A)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

Ana S Leocádio (AS)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

Joana Bom (J)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

Sandra Laurentino (S)

Centre of Reproductive Medicine and Andrology, University Hospital Münster, Münster, Germany.

Moises Mallo (M)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

Sabine Kliesch (S)

Centre of Reproductive Medicine and Andrology, University Hospital Münster, Münster, Germany.

Marek Mutwil (M)

School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.

Luis M Rocha (LM)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.
Department of Systems Science and Industrial Engineering, Binghamton University, New York, United States.

Frank Tüttelmann (F)

Centre of Medical Genetics, Institute of Reproductive Genetics, University and University Hospital of Münster, Münster, Germany.

Jörg D Becker (JD)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.
Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.

Paulo Navarro-Costa (P)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.
EvoReproMed Lab, Environmental Health Institute (ISAMB), Associate Laboratory TERRA, Faculty of Medicine, University of Lisbon, Lisbon, Portugal.

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