NAIRDB: a database of Fourier transform infrared (FTIR) data for nucleic acids.


Journal

Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011

Informations de publication

Date de publication:
16 Oct 2024
Historique:
accepted: 09 10 2024
revised: 16 09 2024
received: 15 08 2024
medline: 16 10 2024
pubmed: 16 10 2024
entrez: 16 10 2024
Statut: aheadofprint

Résumé

The Nucleic Acid InfraRed Data Bank (NAIRDB) serves as a comprehensive public repository dedicated to the archival and free distribution of Fourier transform infrared (FTIR) spectral data specific to nucleic acids. This database encompasses a collection of FTIR spectra covering diverse nucleic acid molecules, including DNA, RNA, DNA/RNA hybrids and their various derivatives. NAIRDB covers details of the experimental conditions for FTIR measurements, literature links, primary sequence data, information about experimentally determined structures for related nucleic acid molecules and/or computationally modeled 3D structures. All entries undergo expert validation and curation to maintain the completeness, consistency and quality of the data. NAIRDB can be searched by similarity of nucleic acid sequences or by direct comparison of spectra. The database is open for the submission of the FTIR data for nucleic acids. NAIRDB is available at https://nairdb.genesilico.pl.

Identifiants

pubmed: 39413200
pii: 7824211
doi: 10.1093/nar/gkae885
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : National Science Centre, Poland
ID : 2020/37/B/NZ2/02456
Organisme : IIMCB
Organisme : Université de Paris
ID : ANR-18-IDEX-0001

Informations de copyright

© The Author(s) 2024. Published by Oxford University Press on behalf of Nucleic Acids Research.

Auteurs

Elsa Balduzzi (E)

Laboratoire Léon Brillouin, UMR 12 CEA/CNRS, Bâtiment 563, Site de Saclay, 91191 Gif-sur-Yvette, France.

Frédéric Geinguenaud (F)

Université Sorbonne Paris Nord, Université Paris Cité, Laboratory for Vascular Translational Science, LVTS, INSERM, UMR 1148, 74 rue Marcel Cachin, F-93017 Bobigny, France.

Dominik Sordyl (D)

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland.

Satyabrata Maiti (S)

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland.

Masoud Amiri Farsani (MA)

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland.

Grigory Nikolaev (G)

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland.

Véronique Arluison (V)

Laboratoire Léon Brillouin, UMR 12 CEA/CNRS, Bâtiment 563, Site de Saclay, 91191 Gif-sur-Yvette, France.
Université Paris Cité, UFR SDV, 35 Rue Hélène Brion, 75013 Paris, France.

Janusz M Bujnicki (JM)

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland.

Classifications MeSH