The seventh blind test of crystal structure prediction: structure ranking methods.

Cambridge Structural Database blind test crystal structure prediction lattice energy polymorphism

Journal

Acta crystallographica Section B, Structural science, crystal engineering and materials
ISSN: 2052-5206
Titre abrégé: Acta Crystallogr B Struct Sci Cryst Eng Mater
Pays: England
ID NLM: 101609037

Informations de publication

Date de publication:
01 Dec 2024
Historique:
medline: 18 10 2024
pubmed: 18 10 2024
entrez: 17 10 2024
Statut: aheadofprint

Résumé

A seventh blind test of crystal structure prediction has been organized by the Cambridge Crystallographic Data Centre. The results are presented in two parts, with this second part focusing on methods for ranking crystal structures in order of stability. The exercise involved standardized sets of structures seeded from a range of structure generation methods. Participants from 22 groups applied several periodic DFT-D methods, machine learned potentials, force fields derived from empirical data or quantum chemical calculations, and various combinations of the above. In addition, one non-energy-based scoring function was used. Results showed that periodic DFT-D methods overall agreed with experimental data within expected error margins, while one machine learned model, applying system-specific AIMnet potentials, agreed with experiment in many cases demonstrating promise as an efficient alternative to DFT-based methods. For target XXXII, a consensus was reached across periodic DFT methods, with consistently high predicted energies of experimental forms relative to the global minimum (above 4 kJ mol

Identifiants

pubmed: 39418598
pii: S2052520624008679
doi: 10.1107/S2052520624008679
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

open access.

Auteurs

Lily M Hunnisett (LM)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Nicholas Francia (N)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Jonas Nyman (J)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Nathan S Abraham (NS)

AbbVie Inc., Research & Development, 1 N Waukegan Road, North Chicago, IL 60064, USA.

Srinivasulu Aitipamula (S)

Crystallization and Particle Sciences, Institute of Chemical and Engineering Sciences, 1, Pesek Road, Singapore, 627833, Singapore.

Tamador Alkhidir (T)

Green Chemistry and Materials Modelling Laboratory, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates.

Mubarak Almehairbi (M)

Green Chemistry and Materials Modelling Laboratory, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates.

Andrea Anelli (A)

Roche Pharma Research and Early Development, Therapeutic Modalities, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, 4070 Basel, Switzerland.

Dylan M Anstine (DM)

Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

John E Anthony (JE)

Department of Chemistry, University of Kentucky, Lexington, KY 40506, USA.

Joseph E Arnold (JE)

School of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.

Faezeh Bahrami (F)

Department of Chemistry, Faculty of Science, Science Boulevard, Ferdowsi University of Mashhad, Mashhad, Iran.

Michael A Bellucci (MA)

XtalPi Inc, 245 Main Street, Cambridge, MA 02142, USA.

Gregory J O Beran (GJO)

Department of Chemistry, University of California, Riverside, CA 92521, USA.

Rajni M Bhardwaj (RM)

AbbVie Inc., Research & Development, 1 N Waukegan Road, North Chicago, IL 60064, USA.

Raffaello Bianco (R)

Ruđer Bošković Institute, Bijenička cesta 54, Zagreb, CroatiaCroatia.

Joanna A Bis (JA)

Catalent Pharma Solutions, 160 Pharma Drive, Morrisville, NC 27560, USA.

A Daniel Boese (AD)

Department of Chemistry, University of Graz, Heinrichstrasse 28, Graz, Austria.

James Bramley (J)

School of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.

Doris E Braun (DE)

University of Innsbruck, Institute of Pharmacy, Innrain 52c, A-6020 Innsbruck, Austria.

Patrick W V Butler (PWV)

School of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.

Joseph Cadden (J)

Crystallization and Particle Sciences, Institute of Chemical and Engineering Sciences, 1, Pesek Road, Singapore, 627833, Singapore.

Stephen Carino (S)

Catalent Pharma Solutions, 160 Pharma Drive, Morrisville, NC 27560, USA.

Ctirad Červinka (C)

Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague, Czech Republic.

Eric J Chan (EJ)

Department of Chemistry, New York University, New York, NY 10003, USA.

Chao Chang (C)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Sarah M Clarke (SM)

Department of Chemistry, Dalhousie University, 6274 Coburg Road, Dalhousie, Halifax, Canada.

Simon J Coles (SJ)

School of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.

Cameron J Cook (CJ)

Department of Chemistry, University of California, Riverside, CA 92521, USA.

Richard I Cooper (RI)

Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK.

Tom Darden (T)

OpenEye Scientific Software, 9 Bisbee Court, Santa Fe, NM 87508, USA.

Graeme M Day (GM)

School of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.

Wenda Deng (W)

Department of Materials Science and Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA.

Hanno Dietrich (H)

Avant-garde Materials Simulation, Alte Strasse 2, 79249 Merzhausen, Germany.

Antonio DiPasquale (A)

Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080, USA.

Bhausaheb Dhokale (B)

Green Chemistry and Materials Modelling Laboratory, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates.

Bouke P van Eijck (BP)

University of Utrecht (Retired), Department of Crystal and Structural Chemistry, Padualaan 8, 3584 CH Utrecht, The Netherlands.

Mark R J Elsegood (MRJ)

Chemistry Department, Loughborough University, Loughborough LE11 3TU, UK.

Dzmitry Firaha (D)

Avant-garde Materials Simulation, Alte Strasse 2, 79249 Merzhausen, Germany.

Wenbo Fu (W)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Kaori Fukuzawa (K)

Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, Osaka 656-0871, Japan.

Nikolaos Galanakis (N)

Department of Chemistry, New York University, New York, NY 10003, USA.

Hitoshi Goto (H)

Information and Media Center, Toyohashi University of Technology, 1-1 Hibarigaoka, Tempaku-cho, Toyohashi, Aichi 441-8580, Japan.

Chandler Greenwell (C)

XtalPi Inc, 245 Main Street, Cambridge, MA 02142, USA.

Rui Guo (R)

Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK.

Jürgen Harter (J)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Julian Helfferich (J)

Avant-garde Materials Simulation, Alte Strasse 2, 79249 Merzhausen, Germany.

Johannes Hoja (J)

Department of Chemistry, University of Graz, Heinrichstrasse 28, Graz, Austria.

John Hone (J)

Syngenta Ltd., Jealott's Hill International Research Station, Berkshire, RG42 6EY, UK.

Richard Hong (R)

AbbVie Inc., Research & Development, 1 N Waukegan Road, North Chicago, IL 60064, USA.

Michal Hušák (M)

Department of Solid State Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague, Czech Republic.

Yasuhiro Ikabata (Y)

Information and Media Center, Toyohashi University of Technology, 1-1 Hibarigaoka, Tempaku-cho, Toyohashi, Aichi 441-8580, Japan.

Olexandr Isayev (O)

Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

Ommair Ishaque (O)

Department of Physics and Astronomy, University of Delaware, Newark, DE 19716, USA.

Varsha Jain (V)

OpenEye Scientific Software, 9 Bisbee Court, Santa Fe, NM 87508, USA.

Yingdi Jin (Y)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Aling Jing (A)

Department of Physics and Astronomy, University of Delaware, Newark, DE 19716, USA.

Erin R Johnson (ER)

Department of Chemistry, Dalhousie University, 6274 Coburg Road, Dalhousie, Halifax, Canada.

Ian Jones (I)

Syngenta Ltd., Jealott's Hill International Research Station, Berkshire, RG42 6EY, UK.

K V Jovan Jose (KVJ)

School of Chemistry, University of Hyderabad, Professor C.R. Rao Road, Gachibowli, Hyderabad, 500046 Telangana, India.

Elena A Kabova (EA)

School of Pharmacy, University of Reading, Whiteknights, Reading, RG6 6AD, UK.

Adam Keates (A)

Syngenta Ltd., Jealott's Hill International Research Station, Berkshire, RG42 6EY, UK.

Paul F Kelly (PF)

Chemistry Department, Loughborough University, Loughborough LE11 3TU, UK.

Jiří Klimeš (J)

Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 3, 121 16 Prague, Czech Republic.

Veronika Kostková (V)

Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague, Czech Republic.

He Li (H)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Xiaolu Lin (X)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Alexander List (A)

Department of Chemistry, University of Graz, Heinrichstrasse 28, Graz, Austria.

Congcong Liu (C)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Yifei Michelle Liu (YM)

Avant-garde Materials Simulation, Alte Strasse 2, 79249 Merzhausen, Germany.

Zenghui Liu (Z)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Ivor Lončarić (I)

Ruđer Bošković Institute, Bijenička cesta 54, Zagreb, CroatiaCroatia.

Joseph W Lubach (JW)

Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080, USA.

Jan Ludík (J)

Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague, Czech Republic.

Alexander A Maryewski (AA)

Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, 121205 Moscow, Russia.

Noa Marom (N)

Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

Hiroyuki Matsui (H)

Graduate School of Organic Materials Science, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Yamagata, Japan.

Alessandra Mattei (A)

AbbVie Inc., Research & Development, 1 N Waukegan Road, North Chicago, IL 60064, USA.

R Alex Mayo (RA)

Department of Chemistry, Dalhousie University, 6274 Coburg Road, Dalhousie, Halifax, Canada.

John W Melkumov (JW)

Department of Physics and Astronomy, University of Delaware, Newark, DE 19716, USA.

Bruno Mladineo (B)

Ruđer Bošković Institute, Bijenička cesta 54, Zagreb, CroatiaCroatia.

Sharmarke Mohamed (S)

Green Chemistry and Materials Modelling Laboratory, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates.

Zahrasadat Momenzadeh Abardeh (Z)

Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, 121205 Moscow, Russia.

Hari S Muddana (HS)

OpenEye Scientific Software, 9 Bisbee Court, Santa Fe, NM 87508, USA.

Naofumi Nakayama (N)

Information and Media Center, Toyohashi University of Technology, 1-1 Hibarigaoka, Tempaku-cho, Toyohashi, Aichi 441-8580, Japan.

Kamal Singh Nayal (KS)

Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

Marcus A Neumann (MA)

Avant-garde Materials Simulation, Alte Strasse 2, 79249 Merzhausen, Germany.

Rahul Nikhar (R)

Department of Physics and Astronomy, University of Delaware, Newark, DE 19716, USA.

Shigeaki Obata (S)

Information and Media Center, Toyohashi University of Technology, 1-1 Hibarigaoka, Tempaku-cho, Toyohashi, Aichi 441-8580, Japan.

Dana O'Connor (D)

Department of Materials Science and Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA.

Artem R Oganov (AR)

Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, 121205 Moscow, Russia.

Koji Okuwaki (K)

School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan.

Alberto Otero-de-la-Roza (A)

Department of Analytical and Physical Chemistry, Faculty of Chemistry, University of Oviedo, Julián Clavería 8, 33006 Oviedo, Spain.

Sean Parkin (S)

Department of Chemistry, University of Kentucky, Lexington, KY 40506, USA.

Antonio Parunov (A)

Ruđer Bošković Institute, Bijenička cesta 54, Zagreb, CroatiaCroatia.

Rafał Podeszwa (R)

Institute of Chemistry, University of Silesia in Katowice, Szkolna 9, 40-006 Katowice, Poland.

Alastair J A Price (AJA)

Department of Chemistry, Dalhousie University, 6274 Coburg Road, Dalhousie, Halifax, Canada.

Louise S Price (LS)

Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK.

Sarah L Price (SL)

Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK.

Michael R Probert (MR)

School of Natural and Environmental Sciences, Newcastle University, Kings Road, Newcastle NE1 7RU, UK.

Angeles Pulido (A)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Gunjan Rajendra Ramteke (GR)

School of Chemistry, University of Hyderabad, Professor C.R. Rao Road, Gachibowli, Hyderabad, 500046 Telangana, India.

Atta Ur Rehman (AU)

Department of Physics and Astronomy, University of Delaware, Newark, DE 19716, USA.

Susan M Reutzel-Edens (SM)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Jutta Rogal (J)

Department of Chemistry, New York University, New York, NY 10003, USA.

Marta J Ross (MJ)

School of Pharmacy, University of Reading, Whiteknights, Reading, RG6 6AD, UK.

Adrian F Rumson (AF)

Department of Chemistry, Dalhousie University, 6274 Coburg Road, Dalhousie, Halifax, Canada.

Ghazala Sadiq (G)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Zeinab M Saeed (ZM)

Green Chemistry and Materials Modelling Laboratory, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates.

Alireza Salimi (A)

Department of Chemistry, Faculty of Science, Science Boulevard, Ferdowsi University of Mashhad, Mashhad, Iran.

Kiran Sasikumar (K)

Avant-garde Materials Simulation, Alte Strasse 2, 79249 Merzhausen, Germany.

Sivakumar Sekharan (S)

XtalPi Inc, 245 Main Street, Cambridge, MA 02142, USA.

Kenneth Shankland (K)

School of Pharmacy, University of Reading, Whiteknights, Reading, RG6 6AD, UK.

Baimei Shi (B)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Xuekun Shi (X)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Kotaro Shinohara (K)

Graduate School of Organic Materials Science, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Yamagata, Japan.

A Geoffrey Skillman (AG)

OpenEye Scientific Software, 9 Bisbee Court, Santa Fe, NM 87508, USA.

Hongxing Song (H)

Department of Chemistry, New York University, New York, NY 10003, USA.

Nina Strasser (N)

Department of Chemistry, University of Graz, Heinrichstrasse 28, Graz, Austria.

Jacco van de Streek (J)

Avant-garde Materials Simulation, Alte Strasse 2, 79249 Merzhausen, Germany.

Isaac J Sugden (IJ)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Guangxu Sun (G)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Krzysztof Szalewicz (K)

Department of Physics and Astronomy, University of Delaware, Newark, DE 19716, USA.

Lu Tan (L)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Kehan Tang (K)

Department of Materials Science and Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA.

Frank Tarczynski (F)

Catalent Pharma Solutions, 160 Pharma Drive, Morrisville, NC 27560, USA.

Christopher R Taylor (CR)

School of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.

Alexandre Tkatchenko (A)

Department of Physics and Materials Science, University of Luxembourg, 1511 Luxembourg City, Luxembourg.

Petr Touš (P)

Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague, Czech Republic.

Mark E Tuckerman (ME)

Department of Chemistry, New York University, New York, NY 10003, USA.

Pablo A Unzueta (PA)

Department of Chemistry, University of California, Riverside, CA 92521, USA.

Yohei Utsumi (Y)

School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan.

Leslie Vogt-Maranto (L)

Department of Chemistry, New York University, New York, NY 10003, USA.

Jake Weatherston (J)

School of Natural and Environmental Sciences, Newcastle University, Kings Road, Newcastle NE1 7RU, UK.

Luke J Wilkinson (LJ)

Chemistry Department, Loughborough University, Loughborough LE11 3TU, UK.

Robert D Willacy (RD)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

Lukasz Wojtas (L)

Department of Chemistry, University of South Florida, USF Research Park, 3720 Spectrum Blvd, IDRB 202, Tampa, FL 33612 USA.

Grahame R Woollam (GR)

Novartis Pharma AG, Basel 4002, Switzerland.

Yi Yang (Y)

Department of Materials Science and Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA.

Zhuocen Yang (Z)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Etsuo Yonemochi (E)

School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan.

Xin Yue (X)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Qun Zeng (Q)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Tian Zhou (T)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Yunfei Zhou (Y)

XtalPi Inc., International Biomedical Innovation Park II 3F 2 Hongliu Road, Futian District, Shenzhen, Guangdong, China.

Roman Zubatyuk (R)

Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

Jason C Cole (JC)

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

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