Single molecule tracking based drug screening.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
17 Oct 2024
Historique:
received: 29 12 2023
accepted: 08 10 2024
medline: 18 10 2024
pubmed: 18 10 2024
entrez: 17 10 2024
Statut: epublish

Résumé

The single-molecule tracking of transmembrane receptors in living cells has provided significant insights into signaling mechanisms, such as mobility and clustering upon their activation/inactivation, making it a potential screening method for drug discovery. Here we show that single-molecule tracking-based screening can be used to explore compounds both detectable and undetectable by conventional methods for disease-related receptors. Using an automated system for a fast large-scale single-molecule analysis, we screen for epidermal growth factor receptor (EGFR) from 1134 of FDA approved drugs. The 18 hit compounds include all EGFR-targeted tyrosine kinase inhibitors (TKIs) in the library that suppress any phosphorylation-dependent mobility shift of EGFR, proving the concept of this approach. The remaining hit compounds are not reported as EGFR-targeted drugs and do not inhibit EGF-induced EGFR phosphorylation. These non-TKI compounds affect the mobility and/or clustering of EGFR without EGF and induce EGFR internalization, to impede EGFR-dependent cell growth. Thus, single-molecule tracking provides an alternative modality for discovering therapeutics on various receptor functions with previously untargeted mechanisms.

Identifiants

pubmed: 39420015
doi: 10.1038/s41467-024-53432-w
pii: 10.1038/s41467-024-53432-w
doi:

Substances chimiques

ErbB Receptors EC 2.7.10.1
Protein Kinase Inhibitors 0
EGFR protein, human EC 2.7.10.1
Epidermal Growth Factor 62229-50-9

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

8975

Subventions

Organisme : Japan Agency for Medical Research and Development (AMED)
ID : JP23ym0126815
Organisme : MEXT | JST | Core Research for Evolutional Science and Technology (CREST)
ID : JPMJCR21E1
Organisme : Ministry of Education, Culture, Sports, Science and Technology (MEXT)
ID : 18H01839
Organisme : Ministry of Education, Culture, Sports, Science and Technology (MEXT)
ID : 22H02593
Organisme : MEXT | Japan Society for the Promotion of Science (JSPS)
ID : 18H05414

Informations de copyright

© 2024. The Author(s).

Références

Santos, R. et al. A comprehensive map of molecular drug targets. Nat. Rev. Drug Discov. 16, 19–34 (2016).
pubmed: 27910877 doi: 10.1038/nrd.2016.230
Hopkins, A. L. & Groom, C. R. The druggable genome. Nat. Rev. Drug Discov. 1, 727–730 (2002).
pubmed: 12209152 doi: 10.1038/nrd892
Vasaikar, S., Bhatia, P., Bhatia, P. G. & Yaiw, K. C. Complementary approaches to existing target based drug discovery for identifying novel drug targets. Biomedicines 4, 27 (2016).
pubmed: 28536394 doi: 10.3390/biomedicines4040027
Kovacs, T., Zakany, F. & Nagy, P. It takes more than two to tango: complex, hierarchal, and membrane-modulated interactions in the regulation of receptor tyrosine kinases. Cancers 14, 944 (2022).
pubmed: 35205690 doi: 10.3390/cancers14040944
Normanno, N., Maiello, M. R. & Luca, A. D. E. Epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs): simple drugs with a complex mechanism of action? J. Cell. Physiol. 19, 13–19 (2002).
Roengvoraphoj, M., Tsongalis, G. J., Dragnev, K. H. & Rigas, J. R. Epidermal growth factor receptor tyrosine kinase inhibitors as initial therapy for non-small cell lung cancer: Focus on epidermal growth factor receptor mutation testing and mutation-positive patients. Cancer Treat. Rev. 39, 839–850 (2013).
pubmed: 23768755 doi: 10.1016/j.ctrv.2013.05.001
Chiba, M. et al. Efficacy of irreversible EGFR-TKIs for the uncommon secondary resistant EGFR mutations L747S, D761Y, and T854A. BMC Cancer 17, 281 (2017).
pubmed: 28424065 pmcid: 5395747 doi: 10.1186/s12885-017-3263-z
Du, X. et al. Acquired resistance to third-generation EGFR-TKIs and emerging next-generation EGFR inhibitors Acquired resistance to third-generation EGFR-TKIs and emerging next-generation EGFR inhibitors. Innovation 2, 100103 (2021).
pubmed: 34557754 pmcid: 8454558
Gao, J., Jian, J., Jiang, Z. & Van Schepdael, A. Screening assays for tyrosine kinase inhibitors: a review. J. Pharm. Biomed. Anal. 223, 115166 (2023).
pubmed: 36403346 doi: 10.1016/j.jpba.2022.115166
Wee, P. & Wang, Z. Epidermal growth factor receptor cell proliferation signaling pathways. Cancers 9, 52 (2017).
pubmed: 28513565 pmcid: 5447962 doi: 10.3390/cancers9050052
Peters, C. et al. Characterization of a new molecule capable of inhibiting several steps of the amyloid cascade in Alzheimer’s disease. Neurobiol. Dis. 141, 104938 (2020).
pubmed: 32434047 doi: 10.1016/j.nbd.2020.104938
Sako, Y., Minoguchi, S. & Yanagida, T. Single-molecule imaging of EGFR signalling on the surface of living cells. Nat. Cell Biol. 2, 168–172 (2000).
pubmed: 10707088 doi: 10.1038/35004044
Ueda, M., Sako, Y., Tanaka, T., Devreotes, P. & Yanagida, T. Single-molecule analysis of chemotactic signaling in Dictyostelium cells. Science 294, 864–867 (2001).
pubmed: 11679673 doi: 10.1126/science.1063951
Iino, R., Koyama, I. & Kusumi, A. Single molecule imaging of green fluorescent proteins in living cells: E-cadherin forms oligomers on the free cell surface. Biophys. J. 80, 2667–2677 (2001).
pubmed: 11371443 pmcid: 1301454 doi: 10.1016/S0006-3495(01)76236-4
Hiroshima, M. et al. Transient acceleration of epidermal growth factor receptor dynamics produces higher-order signaling clusters. J. Mol. Biol. 430, 1386–1401 (2018).
pubmed: 29505756 doi: 10.1016/j.jmb.2018.02.018
Hiroshima, M., Saeki, Y., Okada-Hatakeyama, M. & Sako, Y. Dynamically varying interactions between heregulin and ErbB proteins detected by single-molecule analysis in living cells. Proc. Natl Acad. Sci. USA 109, 13984–13989 (2012).
pubmed: 22891299 pmcid: 3435199 doi: 10.1073/pnas.1200464109
Clarke, D. T. & Martin-Fernandez, M. L. A brief history of single-particle tracking of the epidermal growth factor receptor. Methods Protoc. 2, 12 (2019).
pubmed: 31164594 pmcid: 6481046 doi: 10.3390/mps2010012
Byeon, H. K. Beyond EGFR inhibition: multilateral combat strategies to stop the progression of head and neck cancer. Exp. Mol. Med. 51, 8 (2019).
pubmed: 30700700 pmcid: 6353966 doi: 10.1038/s12276-018-0202-2
Gamble, M. C. et al. Mu-opioid receptor and receptor tyrosine kinase crosstalk: Implications in mechanisms of opioid tolerance, reduced analgesia to neuropathic pain, dependence, and reward. Front. Syst. Neurosci. 16, 1059089 (2022).
pubmed: 36532632 pmcid: 9751598 doi: 10.3389/fnsys.2022.1059089
Yasui, M., Hiroshima, M., Kozuka, J., Sako, Y. & Ueda, M. Automated single-molecule imaging in living cells. Nat. Commun. 9, 3061 (2018).
pubmed: 30076305 pmcid: 6076334 doi: 10.1038/s41467-018-05524-7
Yasui, M., Hiroshima, M. & Ueda, M. United States Patent: 11567293. (2023).
Abourehab, M. A. S., Alqahtani, A. M., Gouda, B. G. M. Y. & Gouda, A. M. Globally approved EGFR inhibitors: insights into their syntheses, target kinases, biological activities, receptor interactions, and metabolism. Molecules 26, 6677 (2021).
pubmed: 34771085 pmcid: 8587155 doi: 10.3390/molecules26216677
Falco et al. Ponatinib (AP24534) is a novel potent inhibitor of oncogenic RET mutants associated with thyroid cancer. J. Clin. Endocrinol. Metab. 98, 811–819 (2013).
doi: 10.1210/jc.2012-2672
Joseph, R. E. et al. Differential impact of BTK active site inhibitors on the conformational state of full-length BTK. eLife 9, e60470 (2020).
pubmed: 33226337 pmcid: 7834017 doi: 10.7554/eLife.60470
Lehmann, M. et al. Activity of topoisomerase inhibitors daunorubicin, idarubicin, and aclarubicin in the drosophila somatic mutation and recombination test. Environ. Mol. Mutagen. 257, 250–257 (2004).
doi: 10.1002/em.20023
Grainger, J. D. Eltrombopag for the treatment of aplastic anemia: current perspectives. Drug Des. Dev. Ther. 10, 2833–2843 (2016).
doi: 10.2147/DDDT.S95715
Carlile, G. W. et al. The NSAID glafenine rescues class 2 CFTR mutants via cyclooxygenase 2 inhibition of the arachidonic acid pathway. Sci. Rep. 12, 4595 (2022).
pubmed: 35302062 pmcid: 8930988 doi: 10.1038/s41598-022-08661-8
Guevremont, C., Jeldres, C., Perrotte, P. & Karakiewicz, P. I. Sorafenib in the management of metastatic renal cell carcinoma. Curr. Oncol. 16, S27–S32 (2009).
pubmed: 19478894 pmcid: 2687798 doi: 10.3747/co.v16i0.430
Kantarjian, H. M. et al. Nilotinib is effective in patients with chronic myeloid leukemia in chronic phase after imatinib resistance or intolerance: 24-month follow-up results. Blood 117, 1141–1145 (2011).
pubmed: 21098399 pmcid: 4916554 doi: 10.1182/blood-2010-03-277152
Borodoker, N. et al. Verteporfin infusion-associated pain. Am. J. Ophthalmol. 133, 211–214 (2002).
pubmed: 11812424 doi: 10.1016/S0002-9394(01)01341-1
Janmaat, M. L., Kruyt, F. A. E., Rodriguez, J. A. & Giaccone, G. Response to epidermal growth factor receptor inhibitors in non-small cell lung cancer cells: Limited antiproliferative effects and absence of apoptosis associated with persistent activity of extracellular signal-regulated kinase or Akt kinase pathways. Clin. Cancer Res. 9, 2316–2326 (2003).
pubmed: 12796401
Walker, F. et al. Activation of the ras/mitogen-activated protein kinase pathway by kinase-defective epidermal growth factor receptors results in cell survival but not proliferation. Mol. Cell Biol. 18, 7192–7204 (1998).
Okada, T., Miyagi, H., Sako, Y., Hiroshima, M. & Mochizuki, A. Origin of diverse phosphorylation patterns in the ERBB system. Biophys. J. 121, 1–11 (2021).
Giocanti, N., Hennequin, C., Rouillard, D., Defrance, R. & Favaudon, V. Additive interaction of gefitinib (‘Iressa’, ZD1839) and ionising radiation in human tumour cells in vitro. Br. J. Cancer 91, 2026–2033 (2004).
pubmed: 15545965 pmcid: 2410146 doi: 10.1038/sj.bjc.6602242
Sharma, A. et al. On-water NiFe2O4 nanoparticle-catalyzed one-pot synthesis of biofunctionalized pyrimidine-thiazole derivatives: In silico binding affinity and in vitro anticancer activity studies. ChemistrySelect 3, 11012–11019 (2018).
doi: 10.1002/slct.201801414
Morita, K. et al. In situ synthesis of an anticancer peptide amphiphile using tyrosine kinase overexpressed in cancer cells. JACS Au 2, 2023–2028 (2022).
pubmed: 36186562 pmcid: 9516706 doi: 10.1021/jacsau.2c00301
Mcswiggen, D. T. et al. A high-throughput platform for single-molecule tracking identifies drug interaction and cellular mechanisms. eLife 12, RP93183 (2024).
de Laurentiis, A., Donovan, L. & Arcaro, A. Lipid rafts and caveolae in signaling by growth factor receptors. Open Biochem. J. 1, 12–32 (2007).
pubmed: 18949068 pmcid: 2570545 doi: 10.2174/1874091X00701010012
Bourseau-Guilmain, E. et al. Hypoxia regulates global membrane protein endocytosis through caveolin-1 in cancer cells. Nat. Commun. 7, 11371 (2016).
pubmed: 27094744 pmcid: 4842985 doi: 10.1038/ncomms11371
Jo, U. et al. EGFR endocytosis is a novel therapeutic target in lung cancer with wild-type EGFR. Oncotarget 5, 1265–1278 (2014).
pubmed: 24658031 pmcid: 4012721 doi: 10.18632/oncotarget.1711
Heppner, D. E. & van der Vliet, A. Redox-dependent regulation of epidermal growth factor receptor signaling. Redox Biol. 8, 24–27 (2016).
pubmed: 26722841 doi: 10.1016/j.redox.2015.12.002
Kim, S. Y. et al. Effects of clioquinol analogues on the hypoxia-inducible factor pathway and intracelullar mobilization of metal ions. Biol. Pharm. Bull. 35, 2160–2169 (2012).
pubmed: 23207768 doi: 10.1248/bpb.b12-00507
Wang, Y. et al. Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factor-mediated upregulation of caveolin-1. Proc. Natl Acad. Sci. USA 109, 4892–4897 (2012).
pubmed: 22411794 pmcid: 3323978 doi: 10.1073/pnas.1112129109
Wen, S. Y. et al. Doxorubicin induced ROS-dependent HIF1α activation mediates blockage of IGF1R survival signaling by IGFBP3 promotes cardiac apoptosis. Aging 15, 164–178 (2023).
pubmed: 36602546 pmcid: 9876638 doi: 10.18632/aging.204466
Wang, H., Jin, H. & Rapraeger, A. C. Syndecan-1 and syndecan-4 capture epidermal growth factor receptor family members and the α3β1 integrin via binding sites in their ectodomains: novel synstatins prevent kinase capture and inhibitα6β4-integrindependent epithelial cell motility. J. Biol. Chem. 290, 26103–26113 (2015).
pubmed: 26350464 pmcid: 4646262 doi: 10.1074/jbc.M115.679084
Alves, A. C. et al. A biophysical approach to daunorubicin interaction with model membranes: relevance for the drug’s biological activity. J. R. Soc. Interface 14, 20170408 (2017).
pubmed: 28855387 pmcid: 5582131 doi: 10.1098/rsif.2017.0408
Matthews, E. E. et al. Thrombopoietin receptor activation: transmembrane helix dimerization, rotation, and allosteric modulation. FASEB J. 25, 2234–2244 (2011).
pubmed: 21402716 pmcid: 3114528 doi: 10.1096/fj.10-178673
Stewart, E. L., Tan, S. Z., Liu, G. & Tsao, M. Known and putative mechanisms of resistance to EGFR targeted therapies in NSCLC patients with EGFR. Transl. Lung Cancer Res. 4, 67–81 (2015).
pubmed: 25806347 pmcid: 4367712
Maeda, R., Sato, T., Okamoto, K., Yanagawa, M. & Sako, Y. Lipid-protein interplay in dimerization of juxtamembrane domains of epidermal growth factor receptor. Biophys. J. 114, 893–903 (2018).
pubmed: 29490249 pmcid: 5984969 doi: 10.1016/j.bpj.2017.12.029
Yoshimura, A., Longmore, G. & Lodish, H. F. Point mutation in the exoplasmic domain of the erythropoietin receptor resulting in hormone-independent activation and tumorigenicity. Nature 348, 647–649 (1990).
pubmed: 2174515 doi: 10.1038/348647a0
Gotoh, N., Tojo, A., Hino, M., Yazaki, Y. & Shibuya, M. A highly conserved tyrosine residue at codon 845 within the kinase domain is not required for the transforming activity of human epidermal growth factor receptor. Biochem. Biophys. Res. Commun. 186, 768–774 (1992).
pubmed: 1323290 doi: 10.1016/0006-291X(92)90812-Y

Auteurs

Daisuke Watanabe (D)

Laboratory of Single Molecule Biology, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Laboratory for Cell Signaling Dynamics, Center for Biosystems Dynamics Research, RIKEN, Suita, Osaka, Japan.

Michio Hiroshima (M)

Laboratory of Single Molecule Biology, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan. m_hiroshima.fbs@osaka-u.ac.jp.
Laboratory for Cell Signaling Dynamics, Center for Biosystems Dynamics Research, RIKEN, Suita, Osaka, Japan. m_hiroshima.fbs@osaka-u.ac.jp.

Masato Yasui (M)

ZIDO Corporation, Toyonaka, Osaka, Japan.

Masahiro Ueda (M)

Laboratory of Single Molecule Biology, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan. ueda.masahiro.fbs@osaka-u.ac.jp.
Laboratory for Cell Signaling Dynamics, Center for Biosystems Dynamics Research, RIKEN, Suita, Osaka, Japan. ueda.masahiro.fbs@osaka-u.ac.jp.
Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan. ueda.masahiro.fbs@osaka-u.ac.jp.

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