Single molecule tracking based drug screening.
ErbB Receptors
/ metabolism
Humans
Phosphorylation
/ drug effects
Protein Kinase Inhibitors
/ pharmacology
Single Molecule Imaging
/ methods
Drug Evaluation, Preclinical
/ methods
Epidermal Growth Factor
/ metabolism
Cell Line, Tumor
Signal Transduction
/ drug effects
Drug Discovery
/ methods
Cell Proliferation
/ drug effects
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
17 Oct 2024
17 Oct 2024
Historique:
received:
29
12
2023
accepted:
08
10
2024
medline:
18
10
2024
pubmed:
18
10
2024
entrez:
17
10
2024
Statut:
epublish
Résumé
The single-molecule tracking of transmembrane receptors in living cells has provided significant insights into signaling mechanisms, such as mobility and clustering upon their activation/inactivation, making it a potential screening method for drug discovery. Here we show that single-molecule tracking-based screening can be used to explore compounds both detectable and undetectable by conventional methods for disease-related receptors. Using an automated system for a fast large-scale single-molecule analysis, we screen for epidermal growth factor receptor (EGFR) from 1134 of FDA approved drugs. The 18 hit compounds include all EGFR-targeted tyrosine kinase inhibitors (TKIs) in the library that suppress any phosphorylation-dependent mobility shift of EGFR, proving the concept of this approach. The remaining hit compounds are not reported as EGFR-targeted drugs and do not inhibit EGF-induced EGFR phosphorylation. These non-TKI compounds affect the mobility and/or clustering of EGFR without EGF and induce EGFR internalization, to impede EGFR-dependent cell growth. Thus, single-molecule tracking provides an alternative modality for discovering therapeutics on various receptor functions with previously untargeted mechanisms.
Identifiants
pubmed: 39420015
doi: 10.1038/s41467-024-53432-w
pii: 10.1038/s41467-024-53432-w
doi:
Substances chimiques
ErbB Receptors
EC 2.7.10.1
Protein Kinase Inhibitors
0
EGFR protein, human
EC 2.7.10.1
Epidermal Growth Factor
62229-50-9
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
8975Subventions
Organisme : Japan Agency for Medical Research and Development (AMED)
ID : JP23ym0126815
Organisme : MEXT | JST | Core Research for Evolutional Science and Technology (CREST)
ID : JPMJCR21E1
Organisme : Ministry of Education, Culture, Sports, Science and Technology (MEXT)
ID : 18H01839
Organisme : Ministry of Education, Culture, Sports, Science and Technology (MEXT)
ID : 22H02593
Organisme : MEXT | Japan Society for the Promotion of Science (JSPS)
ID : 18H05414
Informations de copyright
© 2024. The Author(s).
Références
Santos, R. et al. A comprehensive map of molecular drug targets. Nat. Rev. Drug Discov. 16, 19–34 (2016).
pubmed: 27910877
doi: 10.1038/nrd.2016.230
Hopkins, A. L. & Groom, C. R. The druggable genome. Nat. Rev. Drug Discov. 1, 727–730 (2002).
pubmed: 12209152
doi: 10.1038/nrd892
Vasaikar, S., Bhatia, P., Bhatia, P. G. & Yaiw, K. C. Complementary approaches to existing target based drug discovery for identifying novel drug targets. Biomedicines 4, 27 (2016).
pubmed: 28536394
doi: 10.3390/biomedicines4040027
Kovacs, T., Zakany, F. & Nagy, P. It takes more than two to tango: complex, hierarchal, and membrane-modulated interactions in the regulation of receptor tyrosine kinases. Cancers 14, 944 (2022).
pubmed: 35205690
doi: 10.3390/cancers14040944
Normanno, N., Maiello, M. R. & Luca, A. D. E. Epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs): simple drugs with a complex mechanism of action? J. Cell. Physiol. 19, 13–19 (2002).
Roengvoraphoj, M., Tsongalis, G. J., Dragnev, K. H. & Rigas, J. R. Epidermal growth factor receptor tyrosine kinase inhibitors as initial therapy for non-small cell lung cancer: Focus on epidermal growth factor receptor mutation testing and mutation-positive patients. Cancer Treat. Rev. 39, 839–850 (2013).
pubmed: 23768755
doi: 10.1016/j.ctrv.2013.05.001
Chiba, M. et al. Efficacy of irreversible EGFR-TKIs for the uncommon secondary resistant EGFR mutations L747S, D761Y, and T854A. BMC Cancer 17, 281 (2017).
pubmed: 28424065
pmcid: 5395747
doi: 10.1186/s12885-017-3263-z
Du, X. et al. Acquired resistance to third-generation EGFR-TKIs and emerging next-generation EGFR inhibitors Acquired resistance to third-generation EGFR-TKIs and emerging next-generation EGFR inhibitors. Innovation 2, 100103 (2021).
pubmed: 34557754
pmcid: 8454558
Gao, J., Jian, J., Jiang, Z. & Van Schepdael, A. Screening assays for tyrosine kinase inhibitors: a review. J. Pharm. Biomed. Anal. 223, 115166 (2023).
pubmed: 36403346
doi: 10.1016/j.jpba.2022.115166
Wee, P. & Wang, Z. Epidermal growth factor receptor cell proliferation signaling pathways. Cancers 9, 52 (2017).
pubmed: 28513565
pmcid: 5447962
doi: 10.3390/cancers9050052
Peters, C. et al. Characterization of a new molecule capable of inhibiting several steps of the amyloid cascade in Alzheimer’s disease. Neurobiol. Dis. 141, 104938 (2020).
pubmed: 32434047
doi: 10.1016/j.nbd.2020.104938
Sako, Y., Minoguchi, S. & Yanagida, T. Single-molecule imaging of EGFR signalling on the surface of living cells. Nat. Cell Biol. 2, 168–172 (2000).
pubmed: 10707088
doi: 10.1038/35004044
Ueda, M., Sako, Y., Tanaka, T., Devreotes, P. & Yanagida, T. Single-molecule analysis of chemotactic signaling in Dictyostelium cells. Science 294, 864–867 (2001).
pubmed: 11679673
doi: 10.1126/science.1063951
Iino, R., Koyama, I. & Kusumi, A. Single molecule imaging of green fluorescent proteins in living cells: E-cadherin forms oligomers on the free cell surface. Biophys. J. 80, 2667–2677 (2001).
pubmed: 11371443
pmcid: 1301454
doi: 10.1016/S0006-3495(01)76236-4
Hiroshima, M. et al. Transient acceleration of epidermal growth factor receptor dynamics produces higher-order signaling clusters. J. Mol. Biol. 430, 1386–1401 (2018).
pubmed: 29505756
doi: 10.1016/j.jmb.2018.02.018
Hiroshima, M., Saeki, Y., Okada-Hatakeyama, M. & Sako, Y. Dynamically varying interactions between heregulin and ErbB proteins detected by single-molecule analysis in living cells. Proc. Natl Acad. Sci. USA 109, 13984–13989 (2012).
pubmed: 22891299
pmcid: 3435199
doi: 10.1073/pnas.1200464109
Clarke, D. T. & Martin-Fernandez, M. L. A brief history of single-particle tracking of the epidermal growth factor receptor. Methods Protoc. 2, 12 (2019).
pubmed: 31164594
pmcid: 6481046
doi: 10.3390/mps2010012
Byeon, H. K. Beyond EGFR inhibition: multilateral combat strategies to stop the progression of head and neck cancer. Exp. Mol. Med. 51, 8 (2019).
pubmed: 30700700
pmcid: 6353966
doi: 10.1038/s12276-018-0202-2
Gamble, M. C. et al. Mu-opioid receptor and receptor tyrosine kinase crosstalk: Implications in mechanisms of opioid tolerance, reduced analgesia to neuropathic pain, dependence, and reward. Front. Syst. Neurosci. 16, 1059089 (2022).
pubmed: 36532632
pmcid: 9751598
doi: 10.3389/fnsys.2022.1059089
Yasui, M., Hiroshima, M., Kozuka, J., Sako, Y. & Ueda, M. Automated single-molecule imaging in living cells. Nat. Commun. 9, 3061 (2018).
pubmed: 30076305
pmcid: 6076334
doi: 10.1038/s41467-018-05524-7
Yasui, M., Hiroshima, M. & Ueda, M. United States Patent: 11567293. (2023).
Abourehab, M. A. S., Alqahtani, A. M., Gouda, B. G. M. Y. & Gouda, A. M. Globally approved EGFR inhibitors: insights into their syntheses, target kinases, biological activities, receptor interactions, and metabolism. Molecules 26, 6677 (2021).
pubmed: 34771085
pmcid: 8587155
doi: 10.3390/molecules26216677
Falco et al. Ponatinib (AP24534) is a novel potent inhibitor of oncogenic RET mutants associated with thyroid cancer. J. Clin. Endocrinol. Metab. 98, 811–819 (2013).
doi: 10.1210/jc.2012-2672
Joseph, R. E. et al. Differential impact of BTK active site inhibitors on the conformational state of full-length BTK. eLife 9, e60470 (2020).
pubmed: 33226337
pmcid: 7834017
doi: 10.7554/eLife.60470
Lehmann, M. et al. Activity of topoisomerase inhibitors daunorubicin, idarubicin, and aclarubicin in the drosophila somatic mutation and recombination test. Environ. Mol. Mutagen. 257, 250–257 (2004).
doi: 10.1002/em.20023
Grainger, J. D. Eltrombopag for the treatment of aplastic anemia: current perspectives. Drug Des. Dev. Ther. 10, 2833–2843 (2016).
doi: 10.2147/DDDT.S95715
Carlile, G. W. et al. The NSAID glafenine rescues class 2 CFTR mutants via cyclooxygenase 2 inhibition of the arachidonic acid pathway. Sci. Rep. 12, 4595 (2022).
pubmed: 35302062
pmcid: 8930988
doi: 10.1038/s41598-022-08661-8
Guevremont, C., Jeldres, C., Perrotte, P. & Karakiewicz, P. I. Sorafenib in the management of metastatic renal cell carcinoma. Curr. Oncol. 16, S27–S32 (2009).
pubmed: 19478894
pmcid: 2687798
doi: 10.3747/co.v16i0.430
Kantarjian, H. M. et al. Nilotinib is effective in patients with chronic myeloid leukemia in chronic phase after imatinib resistance or intolerance: 24-month follow-up results. Blood 117, 1141–1145 (2011).
pubmed: 21098399
pmcid: 4916554
doi: 10.1182/blood-2010-03-277152
Borodoker, N. et al. Verteporfin infusion-associated pain. Am. J. Ophthalmol. 133, 211–214 (2002).
pubmed: 11812424
doi: 10.1016/S0002-9394(01)01341-1
Janmaat, M. L., Kruyt, F. A. E., Rodriguez, J. A. & Giaccone, G. Response to epidermal growth factor receptor inhibitors in non-small cell lung cancer cells: Limited antiproliferative effects and absence of apoptosis associated with persistent activity of extracellular signal-regulated kinase or Akt kinase pathways. Clin. Cancer Res. 9, 2316–2326 (2003).
pubmed: 12796401
Walker, F. et al. Activation of the ras/mitogen-activated protein kinase pathway by kinase-defective epidermal growth factor receptors results in cell survival but not proliferation. Mol. Cell Biol. 18, 7192–7204 (1998).
Okada, T., Miyagi, H., Sako, Y., Hiroshima, M. & Mochizuki, A. Origin of diverse phosphorylation patterns in the ERBB system. Biophys. J. 121, 1–11 (2021).
Giocanti, N., Hennequin, C., Rouillard, D., Defrance, R. & Favaudon, V. Additive interaction of gefitinib (‘Iressa’, ZD1839) and ionising radiation in human tumour cells in vitro. Br. J. Cancer 91, 2026–2033 (2004).
pubmed: 15545965
pmcid: 2410146
doi: 10.1038/sj.bjc.6602242
Sharma, A. et al. On-water NiFe2O4 nanoparticle-catalyzed one-pot synthesis of biofunctionalized pyrimidine-thiazole derivatives: In silico binding affinity and in vitro anticancer activity studies. ChemistrySelect 3, 11012–11019 (2018).
doi: 10.1002/slct.201801414
Morita, K. et al. In situ synthesis of an anticancer peptide amphiphile using tyrosine kinase overexpressed in cancer cells. JACS Au 2, 2023–2028 (2022).
pubmed: 36186562
pmcid: 9516706
doi: 10.1021/jacsau.2c00301
Mcswiggen, D. T. et al. A high-throughput platform for single-molecule tracking identifies drug interaction and cellular mechanisms. eLife 12, RP93183 (2024).
de Laurentiis, A., Donovan, L. & Arcaro, A. Lipid rafts and caveolae in signaling by growth factor receptors. Open Biochem. J. 1, 12–32 (2007).
pubmed: 18949068
pmcid: 2570545
doi: 10.2174/1874091X00701010012
Bourseau-Guilmain, E. et al. Hypoxia regulates global membrane protein endocytosis through caveolin-1 in cancer cells. Nat. Commun. 7, 11371 (2016).
pubmed: 27094744
pmcid: 4842985
doi: 10.1038/ncomms11371
Jo, U. et al. EGFR endocytosis is a novel therapeutic target in lung cancer with wild-type EGFR. Oncotarget 5, 1265–1278 (2014).
pubmed: 24658031
pmcid: 4012721
doi: 10.18632/oncotarget.1711
Heppner, D. E. & van der Vliet, A. Redox-dependent regulation of epidermal growth factor receptor signaling. Redox Biol. 8, 24–27 (2016).
pubmed: 26722841
doi: 10.1016/j.redox.2015.12.002
Kim, S. Y. et al. Effects of clioquinol analogues on the hypoxia-inducible factor pathway and intracelullar mobilization of metal ions. Biol. Pharm. Bull. 35, 2160–2169 (2012).
pubmed: 23207768
doi: 10.1248/bpb.b12-00507
Wang, Y. et al. Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factor-mediated upregulation of caveolin-1. Proc. Natl Acad. Sci. USA 109, 4892–4897 (2012).
pubmed: 22411794
pmcid: 3323978
doi: 10.1073/pnas.1112129109
Wen, S. Y. et al. Doxorubicin induced ROS-dependent HIF1α activation mediates blockage of IGF1R survival signaling by IGFBP3 promotes cardiac apoptosis. Aging 15, 164–178 (2023).
pubmed: 36602546
pmcid: 9876638
doi: 10.18632/aging.204466
Wang, H., Jin, H. & Rapraeger, A. C. Syndecan-1 and syndecan-4 capture epidermal growth factor receptor family members and the α3β1 integrin via binding sites in their ectodomains: novel synstatins prevent kinase capture and inhibitα6β4-integrindependent epithelial cell motility. J. Biol. Chem. 290, 26103–26113 (2015).
pubmed: 26350464
pmcid: 4646262
doi: 10.1074/jbc.M115.679084
Alves, A. C. et al. A biophysical approach to daunorubicin interaction with model membranes: relevance for the drug’s biological activity. J. R. Soc. Interface 14, 20170408 (2017).
pubmed: 28855387
pmcid: 5582131
doi: 10.1098/rsif.2017.0408
Matthews, E. E. et al. Thrombopoietin receptor activation: transmembrane helix dimerization, rotation, and allosteric modulation. FASEB J. 25, 2234–2244 (2011).
pubmed: 21402716
pmcid: 3114528
doi: 10.1096/fj.10-178673
Stewart, E. L., Tan, S. Z., Liu, G. & Tsao, M. Known and putative mechanisms of resistance to EGFR targeted therapies in NSCLC patients with EGFR. Transl. Lung Cancer Res. 4, 67–81 (2015).
pubmed: 25806347
pmcid: 4367712
Maeda, R., Sato, T., Okamoto, K., Yanagawa, M. & Sako, Y. Lipid-protein interplay in dimerization of juxtamembrane domains of epidermal growth factor receptor. Biophys. J. 114, 893–903 (2018).
pubmed: 29490249
pmcid: 5984969
doi: 10.1016/j.bpj.2017.12.029
Yoshimura, A., Longmore, G. & Lodish, H. F. Point mutation in the exoplasmic domain of the erythropoietin receptor resulting in hormone-independent activation and tumorigenicity. Nature 348, 647–649 (1990).
pubmed: 2174515
doi: 10.1038/348647a0
Gotoh, N., Tojo, A., Hino, M., Yazaki, Y. & Shibuya, M. A highly conserved tyrosine residue at codon 845 within the kinase domain is not required for the transforming activity of human epidermal growth factor receptor. Biochem. Biophys. Res. Commun. 186, 768–774 (1992).
pubmed: 1323290
doi: 10.1016/0006-291X(92)90812-Y