The Face and Features of RNU4-2: A New, Common, Recognizable, Yet Hidden Neurodevelopmental Disorder.

Genome sequencing Intellectual disability Neurodevelopmental disorders Noncoding gene Spliceosomopathy

Journal

Pediatric neurology
ISSN: 1873-5150
Titre abrégé: Pediatr Neurol
Pays: United States
ID NLM: 8508183

Informations de publication

Date de publication:
21 Sep 2024
Historique:
received: 13 07 2024
revised: 22 08 2024
accepted: 16 09 2024
medline: 19 10 2024
pubmed: 19 10 2024
entrez: 18 10 2024
Statut: aheadofprint

Résumé

RNU4-2 is a newly identified, noncoding gene responsible for a significant proportion of individuals with neurodevelopmental disorders (NDDs). Diagnosis is hampered by the inability of commonly employed clinical testing methods, including exome sequencing and currently formulated multigene panels, to detect variants in the noncoding region. The relatively high prevalence of this condition, predicted to affect thousands of undiagnosed children with NDDs, makes it even more relevant to have better tools to facilitate diagnosis. The initial report of the gene-disease association outlined aggregate phenotypic features but lacked detailed patient evaluations, potentially under-reporting phenotypic features and failing to highlight unique aspects. We aimed to identify individuals with RNU4-2 gene variants to deeply phenotype the clinical profile. We sought to define key features that may suggest the diagnosis, to highlight individuals for whom specialized testing, able to detect noncoding region variants, may be indicated. We reviewed genomic data from 6,734 individuals, identifying five with recurrent de novo RNU4-2 (n.64_65insT) variants. We clinically evaluated four. Findings were compared with those previously reported. We identify common clinical features, a distinctive dysmorphic facial pattern, and shared imaging abnormalities. We describe novel aspects including longitudinal trajectory and treatment response. Enhanced recognition of the RNU4-2 (n.64_65insT-common variant) phenotype, particularly the dysmorphic facial features, will facilitate earlier diagnosis. Distinctive characteristics will guide the selection of patients for testing able to detect RNU4-2 variants: genome sequencing or targeted gene testing. Furthermore, health and research systems may identify undiagnosed patients by querying databases for individuals exhibiting the traits described herein.

Sections du résumé

BACKGROUND BACKGROUND
RNU4-2 is a newly identified, noncoding gene responsible for a significant proportion of individuals with neurodevelopmental disorders (NDDs). Diagnosis is hampered by the inability of commonly employed clinical testing methods, including exome sequencing and currently formulated multigene panels, to detect variants in the noncoding region. The relatively high prevalence of this condition, predicted to affect thousands of undiagnosed children with NDDs, makes it even more relevant to have better tools to facilitate diagnosis. The initial report of the gene-disease association outlined aggregate phenotypic features but lacked detailed patient evaluations, potentially under-reporting phenotypic features and failing to highlight unique aspects. We aimed to identify individuals with RNU4-2 gene variants to deeply phenotype the clinical profile. We sought to define key features that may suggest the diagnosis, to highlight individuals for whom specialized testing, able to detect noncoding region variants, may be indicated.
METHODS METHODS
We reviewed genomic data from 6,734 individuals, identifying five with recurrent de novo RNU4-2 (n.64_65insT) variants. We clinically evaluated four. Findings were compared with those previously reported.
RESULTS RESULTS
We identify common clinical features, a distinctive dysmorphic facial pattern, and shared imaging abnormalities. We describe novel aspects including longitudinal trajectory and treatment response.
CONCLUSIONS CONCLUSIONS
Enhanced recognition of the RNU4-2 (n.64_65insT-common variant) phenotype, particularly the dysmorphic facial features, will facilitate earlier diagnosis. Distinctive characteristics will guide the selection of patients for testing able to detect RNU4-2 variants: genome sequencing or targeted gene testing. Furthermore, health and research systems may identify undiagnosed patients by querying databases for individuals exhibiting the traits described herein.

Identifiants

pubmed: 39423747
pii: S0887-8994(24)00340-0
doi: 10.1016/j.pediatrneurol.2024.09.015
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

188-193

Informations de copyright

Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: J.F.: Spouse is Principal of Friedman Bioventure, which holds a variety of publicly traded and private biotechnology interests. N.A.C.: Consultant in neuroradiology, Avidity Biosciences, Inc, San Diego, CA, USA. K.B., M.N.B., K.W., A.D.B., L.E.T., M.D.C., J.L., and L.M.B declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Kristen Barbour (K)

Division of Genetics and Dysmorphology, Department of Pediatrics, University of California, San Diego, Rady Children's Hospital, San Diego, California.

Matthew N Bainbridge (MN)

Rady Children's Institute for Genomic Medicine, San Diego, California.

Kristen Wigby (K)

Department of Pediatrics, University of California, Davis, Davis, California; University of California Davis Health, MIND Institute, Davis, California.

Aaron D Besterman (AD)

Rady Children's Institute for Genomic Medicine, San Diego, California; Department of Psychiatry, University of California, San Diego, La Jolla, California; Division of Child and Adolescent Psychiatry, Rady Children's Hospital, San Diego, California.

Nathaniel A Chuang (NA)

Department of Radiology, Rady Children's Hospital, San Diego, California; University of California, San Diego, La Jolla, California.

Laura E Tobin (LE)

Rady Children's Institute for Genomic Medicine, San Diego, California.

Miguel Del Campo (M)

Division of Genetics and Dysmorphology, Department of Pediatrics, University of California, San Diego, Rady Children's Hospital, San Diego, California.

Jerica Lenberg (J)

Rady Children's Institute for Genomic Medicine, San Diego, California.

Lynne M Bird (LM)

Division of Genetics and Dysmorphology, Department of Pediatrics, University of California, San Diego, Rady Children's Hospital, San Diego, California.

Jennifer Friedman (J)

Rady Children's Institute for Genomic Medicine, San Diego, California; Departments of Neurosciences and Pediatrics, University of California, San Diego, La Jolla, California; Division of Neurology, Rady Children's Hospital, San Diego, California. Electronic address: jrfriedman@ucsd.edu.

Classifications MeSH