NEON-SD: A 30-m Structural Diversity Product Derived from the NEON Discrete-Return LiDAR Point Cloud.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
29 Oct 2024
Historique:
received: 18 07 2024
accepted: 18 10 2024
medline: 30 10 2024
pubmed: 30 10 2024
entrez: 30 10 2024
Statut: epublish

Résumé

Structural diversity (SD) characterizes the volume and physical arrangement of biotic components in an ecosystem which control critical ecosystem functions and processes. LiDAR data provides detailed 3-D spatial position information of components and has been widely used to calculate SD. However, the intensive computation of SD metrics from extensive LiDAR datasets is time-consuming and challenging for researchers who lack access to high-performance computing resources. Moreover, a lack of understanding of LiDAR data and algorithms could lead to inconsistent SD metrics. Here, we developed a SD product using the Discrete-Return LiDAR Point Cloud from the NEON Aerial Observation Platform. This product provides SD metrics detailing height, density, openness, and complexity at a spatial resolution of 30 m, aligned to the Landsat grids, for 211 site-years for 45 Terrestrial NEON sites from 2013 to 2022. To accommodate various ecosystems with different understory heights, it includes three different cut-off heights (0.5 m, 2 m, and 5 m). This structural diversity product can enable various applications such as ecosystem productivity estimation and disturbance monitoring.

Identifiants

pubmed: 39472447
doi: 10.1038/s41597-024-04018-0
pii: 10.1038/s41597-024-04018-0
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1174

Subventions

Organisme : National Science Foundation (NSF)
ID : 1926538
Organisme : National Science Foundation (NSF)
ID : 1926454
Organisme : National Science Foundation (NSF)
ID : 1926442
Organisme : National Science Foundation (NSF)
ID : 1926538
Organisme : United States Department of Agriculture | National Institute of Food and Agriculture (NIFA)
ID : 2023-68012-38992
Organisme : United States Department of Agriculture | National Institute of Food and Agriculture (NIFA)
ID : 2023-68012-38992

Informations de copyright

© 2024. The Author(s).

Références

LaRue, E. A. et al. A theoretical framework for the ecological role of three‐dimensional structural diversity. Front. Ecol. Environ. 21, 4–13 (2023).
doi: 10.1002/fee.2587
LaRue, E. A. et al. Structural diversity as a reliable and novel predictor for ecosystem productivity. Front. Ecol. Environ. 21, 33–39 (2023).
doi: 10.1002/fee.2586
Hardiman, B. S., Bohrer, G., Gough, C. M., Vogel, C. S. & Curtisi, P. S. The role of canopy structural complexity in wood net primary production of a maturing northern deciduous forest. Ecology 92, 1818–1827 (2011).
doi: 10.1890/10-2192.1 pubmed: 21939078
Hakkenberg, C. R. et al. Inferring alpha, beta, and gamma plant diversity across biomes with GEDI spaceborne lidar. Environ. Res.: Ecology 2, 035005 (2023).
Atkins, J. W. et al. Application of multidimensional structural characterization to detect and describe moderate forest disturbance. Ecosphere 11 (2020).
Atkins, J. W., Shiklomanov, A., Mathes, K. C., Bond-Lamberty, B. & Gough, C. M. Effects of forest structural and compositional change on forest microclimates across a gradient of disturbance severity. Agric. For. Meteorol. 339, 109566 (2023).
doi: 10.1016/j.agrformet.2023.109566
Gough, C. M. et al. Disturbance has variable effects on the structural complexity of a temperate forest landscape. Ecol. Indic. 140, 109004 (2022).
doi: 10.1016/j.ecolind.2022.109004
Choi, D. H. et al. Short‐term effects of moderate severity disturbances on forest canopy structure. J. Ecol. 111, 1866–1881 (2023).
doi: 10.1111/1365-2745.14145
LaRue, E. A. et al. Evaluating the sensitivity of forest structural diversity characterization to LiDAR point density. Ecosphere 13 (2022).
NEON. Discrete return LiDAR point cloud (DP1.30003.001). https://data.neonscience.org/data-products/DP1.30003.001 (2023).
Silveira, E. M. O. et al. Multi-grain habitat models that combine satellite sensors with different resolutions explain bird species richness patterns best. Remote Sens. Environ. 295, 113661 (2023).
doi: 10.1016/j.rse.2023.113661
Gough, C. M., Atkins, J. W., Fahey, R. T. & Hardiman, B. S. High rates of primary production in structurally complex forests. Ecology 100, e02864 (2019).
doi: 10.1002/ecy.2864 pubmed: 31397885
Roussel, J.-R. et al. lidR: An R package for analysis of Airborne Laser Scanning (ALS) data. Remote Sens. Environ. 251, 112061 (2020).
doi: 10.1016/j.rse.2020.112061
de Almeida, D. R. A., Stark, S. C., Silva, C. A., Hamamura, C. & Valbuena, R. leafR: Calculates the Leaf Area Index (LAD) and Other Related Functions. https://CRAN.R-project.org/package=leafR (2021).
Kamoske, A. G., Dahlin, K. M., Stark, S. C. & Serbin, S. P. Leaf area density from airborne LiDAR: Comparing sensors and resolutions in a temperate broadleaf forest ecosystem. For. Ecol. Manage. 433, 364–375 (2019).
doi: 10.1016/j.foreco.2018.11.017
de Almeida, D. R. A. et al. Optimizing the Remote Detection of Tropical Rainforest Structure with Airborne Lidar: Leaf Area Profile Sensitivity to Pulse Density and Spatial Sampling. Remote Sensing 11, 92 (2019).
doi: 10.3390/rs11010092
Atkins, J. W. et al. Scale dependency of lidar-derived forest structural diversity. Methods Ecol. Evol. 14, 708–723 (2023).
doi: 10.1111/2041-210X.14040
Filippelli, S. K., Lefsky, M. A. & Rocca, M. E. Comparison and integration of lidar and photogrammetric point clouds for mapping pre-fire forest structure. Remote Sens. Environ. 224, 154–166 (2019).
doi: 10.1016/j.rse.2019.01.029
Wang, J. et al. Structural Diversity from the NEON Discrete-Return LiDAR Point Cloud in 2013-2022. Environmental Data Initiative https://doi.org/10.6073/pasta/e02f855d69193a46571168575b35291d (2023).
Dewitz, J. National Land Cover Database (NLCD) 2021 products: U.S. Geological Survey data release. https://doi.org/10.5066/P9JZ7AO3 (2023).
NEON. LAI - spectrometer - mosaic (DP3.30012.001). https://doi.org/10.48443/Q59T-3788 (2023).
Dubayah, R. et al. GEDI L2A Elevation and Height Metrics Data Global Footprint Level V002. https://doi.org/10.5067/GEDI/GEDI02_A.002 (2021).
Wang, Y. et al. Is field-measured tree height as reliable as believed – A comparison study of tree height estimates from field measurement, airborne laser scanning and terrestrial laser scanning in a boreal forest. ISPRS J. Photogramm. Remote Sens. 147, 132–145 (2019).
doi: 10.1016/j.isprsjprs.2018.11.008
Oliveira, P. V. C., Zhang, X., Peterson, B. & Ometto, J. P. Using simulated GEDI waveforms to evaluate the effects of beam sensitivity and terrain slope on GEDI L2A relative height metrics over the Brazilian Amazon Forest. Egypt. J. Remote Sens. Space Sci. 7, 100083 (2023).
Roy, D. P., Kashongwe, H. B. & Armston, J. The impact of geolocation uncertainty on GEDI tropical forest canopy height estimation and change monitoring. Egypt. J. Remote Sens. Space Sci. 4, 100024 (2021).
Fang, H., Baret, F., Plummer, S. & Schaepman-Strub, G. An overview of global leaf area index (LAI): Methods, products, validation, and applications. Rev. Geophys. 57, 739–799 (2019).
doi: 10.1029/2018RG000608
Gough, C. M., Vogel, C. S., Schmid, H. P., Su, H.-B. & Curtis, P. S. Multi-year convergence of biometric and meteorological estimates of forest carbon storage. Agric. For. Meteorol. 148, 158–170 (2008).
doi: 10.1016/j.agrformet.2007.08.004
Tian, L. & Qu, Y. Assessing Factors That Affect the Estimation of a Canopy’s Gap Fraction and Extinction Coefficient Using Discrete Airborne LiDAR Data. IEEE Trans. Geosci. Remote Sens. 61, 1–14 (2023).
Liu, J., Skidmore, A. K., Heurich, M. & Wang, T. Significant effect of topographic normalization of airborne LiDAR data on the retrieval of plant area index profile in mountainous forests. ISPRS J. Photogramm. Remote Sens. 132, 77–87 (2017).
doi: 10.1016/j.isprsjprs.2017.08.005
NEON. Slope and Aspect - LiDAR (DP3.30025.001). National Ecological Observatory Network (NEON) (2024).
Silva, C. A. et al. rGEDI: NASA’s Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing. https://github.com/carlos-alberto-silva/rGEDI (2024).

Auteurs

Jianmin Wang (J)

Department of Forestry and Natural Resources, Purdue University, West Lafayette, Indiana, USA.

Dennis H Choi (DH)

Department of Forestry and Natural Resources, Purdue University, West Lafayette, Indiana, USA.

Elizabeth LaRue (E)

Department of Biological Sciences, The University of Texas at El Paso, El Paso, Texas, USA.

Jeff W Atkins (JW)

USDA Forest Service, Southern Research Station, New Ellenton, South Carolina, USA.

Jane R Foster (JR)

USDA Forest Service, Southern Research Station, Tennessee, Knoxville, USA.
Rubenstein School of Environment and Natural Resources, University of Vermont, Burlington, Vermont, USA.

Jaclyn H Matthes (JH)

Harvard Forest, Harvard University, Petersham, Massachusetts, USA.

Robert T Fahey (RT)

Department of Natural Resources and the Environment and Center for Environmental Sciences and Engineering, University of Connecticut, Storrs, Connecticut, USA.

Songlin Fei (S)

Department of Forestry and Natural Resources, Purdue University, West Lafayette, Indiana, USA.

Brady S Hardiman (BS)

Department of Forestry and Natural Resources, Purdue University, West Lafayette, Indiana, USA. hardimanb@purdue.edu.
Department of Environmental and Ecological Engineering, Purdue University, West Lafayette, Indiana, USA. hardimanb@purdue.edu.

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