Human DCP1 is crucial for mRNA decapping and possesses paralog-specific gene regulating functions.

DCP1 paralogs DCP2 biochemistry chemical biology chromosomes gene expression human mRNA decapping mRNA decay pathway post-transcriptional regulation

Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
01 Nov 2024
Historique:
medline: 1 11 2024
pubmed: 1 11 2024
entrez: 1 11 2024
Statut: epublish

Résumé

The mRNA 5'-cap structure removal by the decapping enzyme DCP2 is a critical step in gene regulation. While DCP2 is the catalytic subunit in the decapping complex, its activity is strongly enhanced by multiple factors, particularly DCP1, which is the major activator in yeast. However, the precise role of DCP1 in metazoans has yet to be fully elucidated. Moreover, in humans, the specific biological functions of the two DCP1 paralogs, DCP1a and DCP1b, remain largely unknown. To investigate the role of human DCP1, we generated cell lines that were deficient in DCP1a, DCP1b, or both to evaluate the importance of DCP1 in the decapping machinery. Our results highlight the importance of human DCP1 in decapping process and show that the EVH1 domain of DCP1 enhances the mRNA-binding affinity of DCP2. Transcriptome and metabolome analyses outline the distinct functions of DCP1a and DCP1b in human cells, regulating specific endogenous mRNA targets and biological processes. Overall, our findings provide insights into the molecular mechanism of human DCP1 in mRNA decapping and shed light on the distinct functions of its paralogs.

Identifiants

pubmed: 39485278
doi: 10.7554/eLife.94811
pii: 94811
doi:
pii:

Substances chimiques

DCP1A protein, human EC 3.1.27.-
Endoribonucleases EC 3.1.-
RNA, Messenger 0
RNA Caps 0
DCP2 protein, human EC 3.1.27.-
Trans-Activators 0

Banques de données

GEO
['GSE230847']

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : National Science and Technology Council
ID : MOST109-2311-B-010-001-MY2
Organisme : Yen Tjing Ling Medical Foundation
ID : CI-110-17

Informations de copyright

© 2024, Chen, Liao et al.

Déclaration de conflit d'intérêts

TC, HL, MN, JS, YC, WC, YL, CC No competing interests declared

Auteurs

Ting-Wen Chen (TW)

Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
Department of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
Center for Intelligent Drug Systems and Smart Bio-devices (IDS2 B), National Yang Ming Chiao Tung University, Hsinchu, Taiwan.

Hsiao-Wei Liao (HW)

Department of Pharmacy, National Yang Ming Chiao Tung University, Taipei City, Taiwan.

Michelle Noble (M)

Department of Biochemistry, Max Planck Institute for Developmental Biology, Tübingen, Germany.

Jing-Yi Siao (JY)

Institute of Biochemistry and Molecular Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.

Yu-Hsuan Cheng (YH)

Institute of Biochemistry and Molecular Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.

Wei-Chung Chiang (WC)

Institute of Biochemistry and Molecular Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.

Yi-Tzu Lo (YT)

Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.

Chung-Te Chang (CT)

Department of Biochemistry, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Institute of Biochemistry and Molecular Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.

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Classifications MeSH