Alexandros Stamatakis

Affiliations

Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg 69118, Germany.
Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe 76131, Germany.

Publications (20)

Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data.

Bioinformatics (Oxford, England)

Avec: Lucas Czech , Pierre Barbera ,

GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss.

Molecular biology and evolution

Avec: Benoit Morel , Alexey M Kozlov , Gergely J Szöllősi

Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity.

Molecular ecology resources

Avec: Mahwash Jamy , Rachel Foster , Pierre Barbera , Lucas Czech , Alexey Kozlov , Gary Bending , Sally Hilton , David Bass , Fabien Burki

Expression of D5 dopamine receptors in the lateral ventricle walls during post-weaning rat development.

The International journal of developmental biology

Avec: Antonis Prosilis , Vassilios Mesiakaris , Antonios Stamatakis

The SoftWipe tool and benchmark for assessing coding standards adherence of scientific software.

Scientific reports

Avec: Adrian Zapletal , Dimitri Höhler , Carsten Sinz ,

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Bioinformatics (Oxford, England)

Avec: Nicolas Comte , Benoit Morel , Damir Hasić , Laurent Guéguen , Bastien Boussau , Vincent Daubin , Simon Penel , Celine Scornavacca , Manolo Gouy , Eric Tannier , David P Parsons

Endocrine-disrupting chemicals and behaviour: A high risk to take?

Best practice & research. Clinical endocrinology & metabolism

Avec: Ioannis Bakoyiannis , Efthymia Kitraki , Antonios Stamatakis

Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG.

Bioinformatics (Oxford, England)

Avec: Lukas Hübner , Alexey M Kozlov , Demian Hespe , Peter Sanders ,

Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty.

Molecular biology and evolution

Avec: Anastasis Togkousidis , Oleksiy M Kozlov , Julia Haag , Dimitri Höhler ,

Simulations of sequence evolution: how (un)realistic they are and why.

Molecular biology and evolution

Avec: Johanna Trost , Julia Haag , Dimitri Höhler , Laurent Jacob , Bastien Boussau

Metagenomic Analysis Using Phylogenetic Placement-A Review of the First Decade.

Frontiers in bioinformatics

Avec: Lucas Czech , Micah Dunthorn , Pierre Barbera

AI Techniques to Identify Nerve Cell Alterations in Digital Images.

Studies in health technology and informatics

Avec: Ilias Argyros , Emmanouil Zoulias , Joseph Liaskos , Antonis Stamatakis , John Mantas

Maternal neglect alters reward-anticipatory behavior, social status stability, and reward circuit activation in adult male rats.

Frontiers in neuroscience

Avec: Ermis Ryakiotakis , Dimitra Fousfouka , Antonios Stamatakis

Parameter Estimation and Species Tree Rooting Using ALE and GeneRax.

Genome biology and evolution

Avec: Tom A Williams , Adrián A Davín , Benoit Morel , Lénárd L Szánthó , Anja Spang , Philip Hugenholtz , Gergely J Szöllősi

From Easy to Hopeless-Predicting the Difficulty of Phylogenetic Analyses.

Molecular biology and evolution

Avec: Julia Haag , Dimitri Höhler , Ben Bettisworth ,

Predicting Phylogenetic Bootstrap Values via Machine Learning.

Molecular biology and evolution

Avec: Julius Wiegert , Dimitri Höhler , Julia Haag ,

Root Digger: a root placement program for phylogenetic trees.

BMC bioinformatics

Avec: Ben Bettisworth ,

SCRAPP: A tool to assess the diversity of microbial samples from phylogenetic placements.

Molecular ecology resources

Avec: Pierre Barbera , Lucas Czech , Sarah Lutteropp ,

Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples.

PloS one

Avec: Lucas Czech ,

Synergistic effects of early life mild adversity and chronic social defeat on rat brain microglia and cytokines.

Physiology & behavior

Avec: Vasiliki Ferle , Anastasia Repouskou , George Aspiotis , Androniki Raftogianni , George Chrousos , Fotini Stylianopoulou , Antonios Stamatakis

Réseau de co-auteurs

Lucas Czech 5 collaborations

Dimitri Höhler 5 collaborations

Pierre Barbera 4 collaborations

Antonios Stamatakis 4 collaborations

Julia Haag 4 collaborations

Benoit Morel 3 collaborations

Alexey M Kozlov 2 collaborations

Gergely J Szöllősi 2 collaborations

Bastien Boussau 2 collaborations

Ben Bettisworth 2 collaborations

Mahwash Jamy 1 collaboration

Rachel Foster 1 collaboration

Alexey Kozlov 1 collaboration

Gary Bending 1 collaboration

Sally Hilton 1 collaboration

David Bass 1 collaboration

Fabien Burki 1 collaboration

Antonis Prosilis 1 collaboration

Vassilios Mesiakaris 1 collaboration

Adrian Zapletal 1 collaboration

Carsten Sinz 1 collaboration

Nicolas Comte 1 collaboration

Damir Hasić 1 collaboration

Laurent Guéguen 1 collaboration

Vincent Daubin 1 collaboration

Simon Penel 1 collaboration

Celine Scornavacca 1 collaboration

Manolo Gouy 1 collaboration

Eric Tannier 1 collaboration

David P Parsons 1 collaboration

Ioannis Bakoyiannis 1 collaboration

Efthymia Kitraki 1 collaboration

Lukas Hübner 1 collaboration

Demian Hespe 1 collaboration

Peter Sanders 1 collaboration

Anastasis Togkousidis 1 collaboration

Oleksiy M Kozlov 1 collaboration

Johanna Trost 1 collaboration

Laurent Jacob 1 collaboration

Micah Dunthorn 1 collaboration

Ilias Argyros 1 collaboration

Emmanouil Zoulias 1 collaboration

Joseph Liaskos 1 collaboration

Antonis Stamatakis 1 collaboration

John Mantas 1 collaboration

Ermis Ryakiotakis 1 collaboration

Dimitra Fousfouka 1 collaboration

Tom A Williams 1 collaboration

Adrián A Davín 1 collaboration

Lénárd L Szánthó 1 collaboration

Anja Spang 1 collaboration

Philip Hugenholtz 1 collaboration

Julius Wiegert 1 collaboration

Sarah Lutteropp 1 collaboration

Vasiliki Ferle 1 collaboration

Anastasia Repouskou 1 collaboration

George Aspiotis 1 collaboration

Androniki Raftogianni 1 collaboration

George Chrousos 1 collaboration

Fotini Stylianopoulou 1 collaboration