Adam Klie

Affiliations

Department of Medicine, Division of Medical Genetics, University of California San Diego, La Jolla, CA 92093, USA.
Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA 92093, USA.

Publications (7)

Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.

Database : the journal of biological databases and curation

Avec: Adam Klie , Brian Y Tsui , Shamim Mollah , Dylan Skola , Michelle Dow , Chun-Nan Hsu , Hannah Carter

Epigenetic Germline Variants Predict Cancer Prognosis and Risk and Distribute Uniquely in Topologically Associating Domains.

bioRxiv : the preprint server for biology

Avec: Shervin Goudarzi , Meghana Pagadala , Adam Klie , James V Talwar , Hannah Carter

Predictive analyses of regulatory sequences with EUGENe.

Nature computational science

Avec: Adam Klie , David Laub , James V Talwar , Hayden Stites , Tobias Jores , Joe J Solvason , Emma K Farley , Hannah Carter

In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells.

Scientific reports

Avec: Juan Carlos Jado , Michelle Dow , Krypton Carolino , Adam Klie , Gregory J Fonseca , Trey Ideker , Hannah Carter , Elizabeth A Winzeler

Pre-operative stereotactic radiosurgery and peri-operative dexamethasone for resectable brain metastases: a two-arm pilot study evaluating clinical outcomes and immunological correlates.

Nature communications

Avec: Caroline S Jansen , Meghana S Pagadala , Maria A Cardenas , Roshan S Prabhu , Subir Goyal , Chengjing Zhou , Prasanthi Chappa , BaoHan T Vo , Chengyu Ye , Benjamin Hopkins , Jim Zhong , Adam Klie , Taylor Daniels , Maedot Admassu , India Green , Neil T Pfister , Stewart G Neill , Jeffrey M Switchenko , Nataliya Prokhnevska , Kimberly B Hoang , Mylin A Torres , Suzanna Logan , Jeffrey J Olson , Edjah K Nduom , Luke Del Balzo , Kirtesh Patel , Stuart H Burri , Anthony L Asher , Scott Wilkinson , Ross Lake , Aparna H Kesarwala , Kristin A Higgins , Pretesh Patel , Vishal Dhere , Adam G Sowalsky , Hannah Carter , Mohammad K Khan , Haydn Kissick , Zachary S Buchwald

Single-nucleotide variants within heart enhancers increase binding affinity and disrupt heart development.

Developmental cell

Avec: Granton A Jindal , Alexis T Bantle , Joe J Solvason , Jessica L Grudzien , Agnieszka D'Antonio-Chronowska , Fabian Lim , Sophia H Le , Benjamin P Song , Michelle F Ragsac , Adam Klie , Reid O Larsen , Kelly A Frazer , Emma K Farley

GRIEVOUS: Your command-line general for resolving cross-dataset genotype inconsistencies.

Bioinformatics (Oxford, England)

Avec: James V Talwar , Adam Klie , Meghana S Pagadala , Hannah Carter

Réseau de co-auteurs

Hannah Carter 6 collaborations

James V Talwar 3 collaborations

Michelle Dow 2 collaborations

Joe J Solvason 2 collaborations

Emma K Farley 2 collaborations

Meghana S Pagadala 2 collaborations

Brian Y Tsui 1 collaboration

Shamim Mollah 1 collaboration

Dylan Skola 1 collaboration

Chun-Nan Hsu 1 collaboration

Shervin Goudarzi 1 collaboration

Meghana Pagadala 1 collaboration

David Laub 1 collaboration

Hayden Stites 1 collaboration

Tobias Jores 1 collaboration

Juan Carlos Jado 1 collaboration

Krypton Carolino 1 collaboration

Gregory J Fonseca 1 collaboration

Trey Ideker 1 collaboration

Elizabeth A Winzeler 1 collaboration

Caroline S Jansen 1 collaboration

Maria A Cardenas 1 collaboration

Roshan S Prabhu 1 collaboration

Subir Goyal 1 collaboration

Chengjing Zhou 1 collaboration

Prasanthi Chappa 1 collaboration

BaoHan T Vo 1 collaboration

Chengyu Ye 1 collaboration

Benjamin Hopkins 1 collaboration

Jim Zhong 1 collaboration

Taylor Daniels 1 collaboration

Maedot Admassu 1 collaboration

India Green 1 collaboration

Neil T Pfister 1 collaboration

Stewart G Neill 1 collaboration

Jeffrey M Switchenko 1 collaboration

Nataliya Prokhnevska 1 collaboration

Kimberly B Hoang 1 collaboration

Mylin A Torres 1 collaboration

Suzanna Logan 1 collaboration

Jeffrey J Olson 1 collaboration

Edjah K Nduom 1 collaboration

Luke Del Balzo 1 collaboration

Kirtesh Patel 1 collaboration

Stuart H Burri 1 collaboration

Anthony L Asher 1 collaboration

Scott Wilkinson 1 collaboration

Ross Lake 1 collaboration

Aparna H Kesarwala 1 collaboration

Kristin A Higgins 1 collaboration

Pretesh Patel 1 collaboration

Vishal Dhere 1 collaboration

Adam G Sowalsky 1 collaboration

Mohammad K Khan 1 collaboration

Haydn Kissick 1 collaboration

Zachary S Buchwald 1 collaboration

Granton A Jindal 1 collaboration

Alexis T Bantle 1 collaboration

Jessica L Grudzien 1 collaboration

Agnieszka D'Antonio-Chronowska 1 collaboration

Fabian Lim 1 collaboration

Sophia H Le 1 collaboration

Benjamin P Song 1 collaboration

Michelle F Ragsac 1 collaboration

Reid O Larsen 1 collaboration

Kelly A Frazer 1 collaboration