Benjamin D Kaehler

Affiliations

Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.
School of Science, University of New South Wales, Canberra, Australian Capital Territory, Australia.

Publications (6)

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Nature biotechnology

Avec: Evan Bolyen , Jai Ram Rideout , Matthew R Dillon , Nicholas A Bokulich , Christian C Abnet , Gabriel A Al-Ghalith , Harriet Alexander , Eric J Alm , Manimozhiyan Arumugam , Francesco Asnicar , Yang Bai , Jordan E Bisanz , Kyle Bittinger , Asker Brejnrod , Colin J Brislawn , C Titus Brown , Benjamin J Callahan , Andrés Mauricio Caraballo-Rodríguez , John Chase , Emily K Cope , Ricardo Da Silva , Christian Diener , Pieter C Dorrestein , Gavin M Douglas , Daniel M Durall , Claire Duvallet , Christian F Edwardson , Madeleine Ernst , Mehrbod Estaki , Jennifer Fouquier , Julia M Gauglitz , Sean M Gibbons , Deanna L Gibson , Antonio Gonzalez , Kestrel Gorlick , Jiarong Guo , Benjamin Hillmann , Susan Holmes , Hannes Holste , Curtis Huttenhower , Gavin A Huttley , Stefan Janssen , Alan K Jarmusch , Lingjing Jiang , Benjamin D Kaehler , Kyo Bin Kang , Christopher R Keefe , Paul Keim , Scott T Kelley , Dan Knights , Irina Koester , Tomasz Kosciolek , Jorden Kreps , Morgan G I Langille , Joslynn Lee , Ruth Ley , Yong-Xin Liu , Erikka Loftfield , Catherine Lozupone , Massoud Maher , Clarisse Marotz , Bryan D Martin , Daniel McDonald , Lauren J McIver , Alexey V Melnik , Jessica L Metcalf , Sydney C Morgan , Jamie T Morton , Ahmad Turan Naimey , Jose A Navas-Molina , Louis Felix Nothias , Stephanie B Orchanian , Talima Pearson , Samuel L Peoples , Daniel Petras , Mary Lai Preuss , Elmar Pruesse , Lasse Buur Rasmussen , Adam Rivers , Michael S Robeson , Patrick Rosenthal , Nicola Segata , Michael Shaffer , Arron Shiffer , Rashmi Sinha , Se Jin Song , John R Spear , Austin D Swafford , Luke R Thompson , Pedro J Torres , Pauline Trinh , Anupriya Tripathi , Peter J Turnbaugh , Sabah Ul-Hasan , Justin J J van der Hooft , Fernando Vargas , Yoshiki Vázquez-Baeza , Emily Vogtmann , Max von Hippel , William Walters , Yunhu Wan , Mingxun Wang , Jonathan Warren , Kyle C Weber , Charles H D Williamson , Amy D Willis , Zhenjiang Zech Xu , Jesse R Zaneveld , Yilong Zhang , Qiyun Zhu , Rob Knight , J Gregory Caporaso

Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods.

Computational and structural biotechnology journal

Avec: Nicholas A Bokulich , Michal Ziemski , Michael S Robeson , Benjamin D Kaehler

Species abundance information improves sequence taxonomy classification accuracy.

Nature communications

Avec: Benjamin D Kaehler , Nicholas A Bokulich , Daniel McDonald , Rob Knight , J Gregory Caporaso , Gavin A Huttley

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.

PLoS computational biology

Avec: Matthew R Dillon , Evan Bolyen , Anja Adamov , Aeriel Belk , Emily Borsom , Zachary Burcham , Justine W Debelius , Heather Deel , Alex Emmons , Mehrbod Estaki , Chloe Herman , Christopher R Keefe , Jamie T Morton , Renato R M Oliveira , Andrew Sanchez , Anthony Simard , Yoshiki Vázquez-Baeza , Michal Ziemski , Hazuki E Miwa , Terry A Kerere , Carline Coote , Richard Bonneau , Rob Knight , Guilherme Oliveira , Piraveen Gopalasingam , Benjamin D Kaehler , Emily K Cope , Jessica L Metcalf , Michael S Robeson Ii , Nicholas A Bokulich , J Gregory Caporaso

Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences.

Frontiers in microbiology

Avec: Michal Ziemski , Treepop Wisanwanichthan , Nicholas A Bokulich , Benjamin D Kaehler

RESCRIPt: Reproducible sequence taxonomy reference database management.

PLoS computational biology

Avec: Michael S Robeson , Devon R O'Rourke , Benjamin D Kaehler , Michal Ziemski , Matthew R Dillon , Jeffrey T Foster , Nicholas A Bokulich

Réseau de co-auteurs

Nicholas A Bokulich 6 collaborations

Michal Ziemski 4 collaborations

Matthew R Dillon 3 collaborations

Michael S Robeson 3 collaborations

Rob Knight 3 collaborations

J Gregory Caporaso 3 collaborations

Evan Bolyen 2 collaborations

Emily K Cope 2 collaborations

Mehrbod Estaki 2 collaborations

Gavin A Huttley 2 collaborations

Christopher R Keefe 2 collaborations

Daniel McDonald 2 collaborations

Jessica L Metcalf 2 collaborations

Jamie T Morton 2 collaborations

Yoshiki Vázquez-Baeza 2 collaborations

Jai Ram Rideout 1 collaboration

Christian C Abnet 1 collaboration

Gabriel A Al-Ghalith 1 collaboration

Harriet Alexander 1 collaboration

Eric J Alm 1 collaboration

Manimozhiyan Arumugam 1 collaboration

Francesco Asnicar 1 collaboration

Yang Bai 1 collaboration

Jordan E Bisanz 1 collaboration

Kyle Bittinger 1 collaboration

Asker Brejnrod 1 collaboration

Colin J Brislawn 1 collaboration

C Titus Brown 1 collaboration

Benjamin J Callahan 1 collaboration

Andrés Mauricio Caraballo-Rodríguez 1 collaboration

John Chase 1 collaboration

Ricardo Da Silva 1 collaboration

Christian Diener 1 collaboration

Pieter C Dorrestein 1 collaboration

Gavin M Douglas 1 collaboration

Daniel M Durall 1 collaboration

Claire Duvallet 1 collaboration

Christian F Edwardson 1 collaboration

Madeleine Ernst 1 collaboration

Jennifer Fouquier 1 collaboration

Julia M Gauglitz 1 collaboration

Sean M Gibbons 1 collaboration

Deanna L Gibson 1 collaboration

Antonio Gonzalez 1 collaboration

Kestrel Gorlick 1 collaboration

Jiarong Guo 1 collaboration

Benjamin Hillmann 1 collaboration

Susan Holmes 1 collaboration

Hannes Holste 1 collaboration

Curtis Huttenhower 1 collaboration

Stefan Janssen 1 collaboration

Alan K Jarmusch 1 collaboration

Lingjing Jiang 1 collaboration

Kyo Bin Kang 1 collaboration

Paul Keim 1 collaboration

Scott T Kelley 1 collaboration

Dan Knights 1 collaboration

Irina Koester 1 collaboration

Tomasz Kosciolek 1 collaboration

Jorden Kreps 1 collaboration

Morgan G I Langille 1 collaboration

Joslynn Lee 1 collaboration

Ruth Ley 1 collaboration

Yong-Xin Liu 1 collaboration

Erikka Loftfield 1 collaboration

Catherine Lozupone 1 collaboration

Massoud Maher 1 collaboration

Clarisse Marotz 1 collaboration

Bryan D Martin 1 collaboration

Lauren J McIver 1 collaboration

Alexey V Melnik 1 collaboration

Sydney C Morgan 1 collaboration

Ahmad Turan Naimey 1 collaboration

Jose A Navas-Molina 1 collaboration

Louis Felix Nothias 1 collaboration

Stephanie B Orchanian 1 collaboration

Talima Pearson 1 collaboration

Samuel L Peoples 1 collaboration

Daniel Petras 1 collaboration

Mary Lai Preuss 1 collaboration

Elmar Pruesse 1 collaboration

Lasse Buur Rasmussen 1 collaboration

Adam Rivers 1 collaboration

Patrick Rosenthal 1 collaboration

Nicola Segata 1 collaboration

Michael Shaffer 1 collaboration

Arron Shiffer 1 collaboration

Rashmi Sinha 1 collaboration

Se Jin Song 1 collaboration

John R Spear 1 collaboration

Austin D Swafford 1 collaboration

Luke R Thompson 1 collaboration

Pedro J Torres 1 collaboration

Pauline Trinh 1 collaboration

Anupriya Tripathi 1 collaboration

Peter J Turnbaugh 1 collaboration

Sabah Ul-Hasan 1 collaboration

Justin J J van der Hooft 1 collaboration

Fernando Vargas 1 collaboration

Emily Vogtmann 1 collaboration

Max von Hippel 1 collaboration

William Walters 1 collaboration

Yunhu Wan 1 collaboration

Mingxun Wang 1 collaboration

Jonathan Warren 1 collaboration

Kyle C Weber 1 collaboration

Charles H D Williamson 1 collaboration

Amy D Willis 1 collaboration

Zhenjiang Zech Xu 1 collaboration

Jesse R Zaneveld 1 collaboration

Yilong Zhang 1 collaboration

Qiyun Zhu 1 collaboration

Anja Adamov 1 collaboration

Aeriel Belk 1 collaboration

Emily Borsom 1 collaboration

Zachary Burcham 1 collaboration

Justine W Debelius 1 collaboration

Heather Deel 1 collaboration

Alex Emmons 1 collaboration

Chloe Herman 1 collaboration

Renato R M Oliveira 1 collaboration

Andrew Sanchez 1 collaboration

Anthony Simard 1 collaboration

Hazuki E Miwa 1 collaboration

Terry A Kerere 1 collaboration

Carline Coote 1 collaboration

Richard Bonneau 1 collaboration

Guilherme Oliveira 1 collaboration

Piraveen Gopalasingam 1 collaboration

Michael S Robeson Ii 1 collaboration

Treepop Wisanwanichthan 1 collaboration

Devon R O'Rourke 1 collaboration

Jeffrey T Foster 1 collaboration