Benjamin Demaree

Affiliations

Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, USA.
UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco, San Francisco, CA, USA.

ORCID: 0000-0003-2278-6633

Publications (10)

Joint profiling of DNA and proteins in single cells to dissect genotype-phenotype associations in leukemia.

Nature communications

Avec: Benjamin Demaree , Cyrille L Delley , Harish N Vasudevan , Cheryl A C Peretz , David Ruff , Catherine C Smith , Adam R Abate

Single-cell mutation analysis of clonal evolution in myeloid malignancies.

Nature

Avec: Linde A Miles , Robert L Bowman , Tiffany R Merlinsky , Isabelle S Csete , Aik T Ooi , Robert Durruthy-Durruthy , Michael Bowman , Christopher Famulare , Minal A Patel , Pedro Mendez , Chrysanthi Ainali , Benjamin Demaree , Cyrille L Delley , Adam R Abate , Manimozhi Manivannan , Sombeet Sahu , Aaron D Goldberg , Kelly L Bolton , Ahmet Zehir , Raajit Rampal , Martin P Carroll , Sara E Meyer , Aaron D Viny , Ross L Levine

Networks of High Aspect Ratio Particles to Direct Colloidal Assembly Dynamics and Cellular Interactions.

Advanced functional materials

Avec: Joel A Finbloom , Benjamin Demaree , Adam R Abate , Tejal A Desai

Constrained chromatin accessibility in PU.1-mutated agammaglobulinemia patients.

The Journal of experimental medicine

Avec: Carole Le Coz , David N Nguyen , Chun Su , Brian E Nolan , Amanda V Albrecht , Suela Xhani , Di Sun , Benjamin Demaree , Piyush Pillarisetti , Caroline Khanna , Francis Wright , Peixin Amy Chen , Samuel Yoon , Amy L Stiegler , Kelly Maurer , James P Garifallou , Amy Rymaszewski , Steven H Kroft , Timothy S Olson , Alix E Seif , Gerald Wertheim , Struan F A Grant , Linda T Vo , Jennifer M Puck , Kathleen E Sullivan , John M Routes , Viktoria Zakharova , Anna Shcherbina , Anna Mukhina , Natasha L Rudy , Anna C E Hurst , T Prescott Atkinson , Titus J Boggon , Hakon Hakonarson , Adam R Abate , Joud Hajjar , Sarah K Nicholas , James R Lupski , James Verbsky , Ivan K Chinn , Michael V Gonzalez , Andrew D Wells , Alex Marson , Gregory M K Poon , Neil Romberg

Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma.

Nature communications

Avec: Stephen T Magill , Harish N Vasudevan , Kyounghee Seo , Javier E Villanueva-Meyer , Abrar Choudhury , S John Liu , Melike Pekmezci , Sarah Findakly , Stephanie Hilz , Sydney Lastella , Benjamin Demaree , Steve E Braunstein , Nancy Ann Oberheim Bush , Manish K Aghi , Philip V Theodosopoulos , Penny K Sneed , Adam R Abate , Mitchel S Berger , Michael W McDermott , Daniel A Lim , Erik M Ullian , Joseph F Costello , David R Raleigh

Microfluidic automated plasmid library enrichment for biosynthetic gene cluster discovery.

Nucleic acids research

Avec: Peng Xu , Cyrus Modavi , Benjamin Demaree , Frederick Twigg , Benjamin Liang , Chen Sun , Wenjun Zhang , Adam R Abate

Multiplatform Molecular Profiling Reveals Epigenomic Intratumor Heterogeneity in Ependymoma.

Cell reports

Avec: S John Liu , Stephen T Magill , Harish N Vasudevan , Stephanie Hilz , Javier E Villanueva-Meyer , Sydney Lastella , Vikas Daggubati , Jordan Spatz , Abrar Choudhury , Brent A Orr , Benjamin Demaree , Kyounghee Seo , Sean P Ferris , Adam R Abate , Nancy Ann Oberheim Bush , Andrew W Bollen , Michael W McDermott , Joseph F Costello , David R Raleigh

Human intestinal spheroids cultured using Sacrificial Micromolding as a model system for studying drug transport.

Scientific reports

Avec: Karen E Samy , Elizabeth S Levy , Kiet Phong , Benjamin Demaree , Adam R Abate , Tejal A Desai

Microbiome single cell atlases generated with a commercial instrument.

bioRxiv : the preprint server for biology

Avec: Xiangpeng Li , Linfeng Xu , Benjamin Demaree , Cecilia Noecker , Jordan E Bisanz , Daniel W Weisgerber , Cyrus Modavi , Peter J Turnbaugh , Adam R Abate

Microbiome single cell atlases generated with a commercial instrument.

Research square

Avec: Adam Abate , Xiangpeng Li , Linfeng Xu , Benjamin Demaree , Cecilia Noecker , Jordan Bisanz , Daniel Weisgerber , Cyrus Modavi , Peter Turnbaugh

Réseau de co-auteurs

Adam R Abate 9 collaborations

Harish N Vasudevan 3 collaborations

Cyrus Modavi 3 collaborations

Cyrille L Delley 2 collaborations

Tejal A Desai 2 collaborations

Stephen T Magill 2 collaborations

Kyounghee Seo 2 collaborations

Javier E Villanueva-Meyer 2 collaborations

Abrar Choudhury 2 collaborations

S John Liu 2 collaborations

Stephanie Hilz 2 collaborations

Sydney Lastella 2 collaborations

Nancy Ann Oberheim Bush 2 collaborations

Michael W McDermott 2 collaborations

Joseph F Costello 2 collaborations

David R Raleigh 2 collaborations

Xiangpeng Li 2 collaborations

Linfeng Xu 2 collaborations

Cecilia Noecker 2 collaborations

Cheryl A C Peretz 1 collaboration

David Ruff 1 collaboration

Catherine C Smith 1 collaboration

Linde A Miles 1 collaboration

Robert L Bowman 1 collaboration

Tiffany R Merlinsky 1 collaboration

Isabelle S Csete 1 collaboration

Aik T Ooi 1 collaboration

Robert Durruthy-Durruthy 1 collaboration

Michael Bowman 1 collaboration

Christopher Famulare 1 collaboration

Minal A Patel 1 collaboration

Pedro Mendez 1 collaboration

Chrysanthi Ainali 1 collaboration

Manimozhi Manivannan 1 collaboration

Sombeet Sahu 1 collaboration

Aaron D Goldberg 1 collaboration

Kelly L Bolton 1 collaboration

Ahmet Zehir 1 collaboration

Raajit Rampal 1 collaboration

Martin P Carroll 1 collaboration

Sara E Meyer 1 collaboration

Aaron D Viny 1 collaboration

Ross L Levine 1 collaboration

Joel A Finbloom 1 collaboration

Carole Le Coz 1 collaboration

David N Nguyen 1 collaboration

Chun Su 1 collaboration

Brian E Nolan 1 collaboration

Amanda V Albrecht 1 collaboration

Suela Xhani 1 collaboration

Di Sun 1 collaboration

Piyush Pillarisetti 1 collaboration

Caroline Khanna 1 collaboration

Francis Wright 1 collaboration

Peixin Amy Chen 1 collaboration

Samuel Yoon 1 collaboration

Amy L Stiegler 1 collaboration

Kelly Maurer 1 collaboration

James P Garifallou 1 collaboration

Amy Rymaszewski 1 collaboration

Steven H Kroft 1 collaboration

Timothy S Olson 1 collaboration

Alix E Seif 1 collaboration

Gerald Wertheim 1 collaboration

Struan F A Grant 1 collaboration

Linda T Vo 1 collaboration

Jennifer M Puck 1 collaboration

Kathleen E Sullivan 1 collaboration

John M Routes 1 collaboration

Viktoria Zakharova 1 collaboration

Anna Shcherbina 1 collaboration

Anna Mukhina 1 collaboration

Natasha L Rudy 1 collaboration

Anna C E Hurst 1 collaboration

T Prescott Atkinson 1 collaboration

Titus J Boggon 1 collaboration

Hakon Hakonarson 1 collaboration

Joud Hajjar 1 collaboration

Sarah K Nicholas 1 collaboration

James R Lupski 1 collaboration

James Verbsky 1 collaboration

Ivan K Chinn 1 collaboration

Michael V Gonzalez 1 collaboration

Andrew D Wells 1 collaboration

Alex Marson 1 collaboration

Gregory M K Poon 1 collaboration

Neil Romberg 1 collaboration

Melike Pekmezci 1 collaboration

Sarah Findakly 1 collaboration

Steve E Braunstein 1 collaboration

Manish K Aghi 1 collaboration

Philip V Theodosopoulos 1 collaboration

Penny K Sneed 1 collaboration

Mitchel S Berger 1 collaboration

Daniel A Lim 1 collaboration

Erik M Ullian 1 collaboration

Peng Xu 1 collaboration

Frederick Twigg 1 collaboration

Benjamin Liang 1 collaboration

Chen Sun 1 collaboration

Wenjun Zhang 1 collaboration

Vikas Daggubati 1 collaboration

Jordan Spatz 1 collaboration

Brent A Orr 1 collaboration

Sean P Ferris 1 collaboration

Andrew W Bollen 1 collaboration

Karen E Samy 1 collaboration

Elizabeth S Levy 1 collaboration

Kiet Phong 1 collaboration

Jordan E Bisanz 1 collaboration

Daniel W Weisgerber 1 collaboration

Peter J Turnbaugh 1 collaboration

Adam Abate 1 collaboration

Jordan Bisanz 1 collaboration

Daniel Weisgerber 1 collaboration

Peter Turnbaugh 1 collaboration