C Angione

Affiliations

Department of Computer Science and Information Systems, Teesside University, Middlesbrough, TS4 3BX, UK.

ORCID: 0000-0002-3140-7909

Publications (34)

Human Systems Biology and Metabolic Modelling: A Review-From Disease Metabolism to Precision Medicine.

BioMed research international

Avec: Claudio Angione

Dissecting the transcriptome in cardiovascular disease.

Cardiovascular research

Avec: Emma L Robinson , Andrew H Baker , Mairi Brittan , Ian McCracken , G Condorelli , C Emanueli , P K Srivastava , C Gaetano , T Thum , M Vanhaverbeke , C Angione , S Heymans , Y Devaux , T Pedrazzini , F Martelli , Auteur inconnu

A Practical Guide to Integrating Multimodal Machine Learning and Metabolic Modeling.

Methods in molecular biology (Clifton, N.J.)

Avec: Supreeta Vijayakumar , Giuseppe Magazzù , Pradip Moon , Annalisa Occhipinti , Claudio Angione

Cross-attention enables deep learning on limited omics-imaging-clinical data of 130 lung cancer patients.

Cell reports methods

Avec: Suraj Verma , Giuseppe Magazzù , Noushin Eftekhari , Thai Lou , Alex Gilhespy , Annalisa Occhipinti , Claudio Angione

Machine and deep learning meet genome-scale metabolic modeling.

PLoS computational biology

Avec: Guido Zampieri , Supreeta Vijayakumar , Elisabeth Yaneske , Claudio Angione

Computational profiling of natural compounds as promising inhibitors against the spike proteins of SARS-CoV-2 wild-type and the variants of concern, viral cell-entry process, and cytokine storm in COVID-19.

Journal of cellular biochemistry

Avec: Pallab Kar , Md Moshfekus Saleh-E-In , Nishika Jaishee , Akash Anandraj , Emil Kormuth , Balachandar Vellingiri , Claudio Angione , Pattanathu K S M Rahman , Suntheren Pillay , Arnab Sen , Devashan Naidoo , Ayan Roy , Yong E Choi

Multi-dimensional experimental and computational exploration of metabolism pinpoints complex probiotic interactions.

Metabolic engineering

Avec: Guido Zampieri , Georgios Efthimiou , Claudio Angione

Integration of epigenetic regulatory mechanisms in heart failure.

Basic research in cardiology

Avec: Miron Sopic , Emma L Robinson , Costanza Emanueli , Prashant Srivastava , Claudio Angione , Carlo Gaetano , Gianluigi Condorelli , Fabio Martelli , Thierry Pedrazzini , Yvan Devaux , Auteur inconnu

Microbiome alterations are associated with apolipoprotein E mutation in

iScience

Avec: Guido Zampieri , Léa Cabrol , Claudio Urra , Eduardo Castro-Nallar , Guillaume Schwob , David Cleary , Claudio Angione , Robert M J Deacon , Michael J Hurley , Patricia Cogram

Social dynamics modeling of chrono-nutrition.

PLoS computational biology

Avec: Alessandro Di Stefano , Marialisa Scatà , Supreeta Vijayakumar , Claudio Angione , Aurelio La Corte , Pietro Liò

A Hybrid Flux Balance Analysis and Machine Learning Pipeline Elucidates Metabolic Adaptation in Cyanobacteria.

iScience

Avec: Supreeta Vijayakumar , Pattanathu K S M Rahman , Claudio Angione

Integrating genome-scale metabolic modelling and transfer learning for human gene regulatory network reconstruction.

Bioinformatics (Oxford, England)

Avec: Gianvito Pio , Paolo Mignone , Giuseppe Magazzù , Guido Zampieri , Michelangelo Ceci , Claudio Angione

Using machine learning as a surrogate model for agent-based simulations.

PloS one

Avec: Claudio Angione , Eric Silverman , Elisabeth Yaneske

Machine Learning Methods for Survival Analysis with Clinical and Transcriptomics Data of Breast Cancer.

Methods in molecular biology (Clifton, N.J.)

Avec: Le Minh Thao Doan , Claudio Angione , Annalisa Occhipinti

Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities.

Cell reports methods

Avec: Guido Zampieri , Stefano Campanaro , Claudio Angione , Laura Treu

Ablation of the dystrophin Dp71f alternative C-terminal variant increases sarcoma tumour cell aggressiveness.

Human molecular genetics

Avec: Nancy Alnassar , Jacek Hajto , Robin M H Rumney , Suraj Verma , Malgorzata Borczyk , Chandrika Saha , Janos Kanczler , Arthur M Butt , Annalisa Occhipinti , Joanna Pomeroy , Claudio Angione , Michal Korostynski , Dariusz C Górecki

Genome Sequencing Variations in the

Frontiers in aging neuroscience

Avec: Michael J Hurley , Claudio Urra , B Maximiliano Garduno , Agostino Bruno , Allison Kimbell , Brent Wilkinson , Cristina Marino-Buslje , Marcelo Ezquer , Fernando Ezquer , Pedro F Aburto , Elie Poulin , Rodrigo A Vasquez , Robert Deacon , Ariel Avila , Francisco Altimiras , Peter Whitney Vanderklish , Guido Zampieri , Claudio Angione , Gabriele Constantino , Todd C Holmes , Marcelo P Coba , Xiangmin Xu , Patricia Cogram

Loss of full-length dystrophin expression results in major cell-autonomous abnormalities in proliferating myoblasts.

eLife

Avec: Maxime R F Gosselin , Virginie Mournetas , Malgorzata Borczyk , Suraj Verma , Annalisa Occhipinti , Justyna Róg , Lukasz Bozycki , Michal Korostynski , Samuel C Robson , Claudio Angione , Christian Pinset , Dariusz C Gorecki

The diagnostic and prognostic potential of the EGFR/MUC4/MMP9 axis in glioma patients.

Scientific reports

Avec: Agathe Quesnel , Nathan Coles , Tuomo M Polvikoski , George S Karagiannis , Claudio Angione , Meez Islam , Ahmad A Khundakar , Panagiota S Filippou

Ten quick tips for avoiding pitfalls in multi-omics data integration analyses.

PLoS computational biology

Avec: Davide Chicco , Fabio Cumbo , Claudio Angione

Uncovering potential diagnostic and pathophysiological roles of α-synuclein and DJ-1 in melanoma.

Cancer medicine

Avec: Agathe Quesnel , Leya Danielle Martin , Chaimaa Tarzi , Vasileios P Lenis , Nathan Coles , Meez Islam , Claudio Angione , Tiago F Outeiro , Ahmad A Khundakar , Panagiota S Filippou

Genome-Scale Metabolic Modeling of Halomonas elongata 153B Explains Polyhydroxyalkanoate and Ectoine Biosynthesis in Hypersaline Environments.

Biotechnology journal

Avec: Blaise Manga Enuh , Pınar Aytar Çelik , Claudio Angione

Discovering Essential Multiple Gene Effects Through Large Scale Optimization: An Application to Human Cancer Metabolism.

IEEE/ACM transactions on computational biology and bioinformatics

Avec: Annalisa Occhipinti , Youssef Hamadi , Hillel Kugler , Christoph M Wintersteiger , Boyan Yordanov , Claudio Angione

A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Christopher Culley , Supreeta Vijayakumar , Guido Zampieri , Claudio Angione

Protocol for hybrid flux balance, statistical, and machine learning analysis of multi-omic data from the cyanobacterium

STAR protocols

Avec: Supreeta Vijayakumar , Claudio Angione

Integrated multi-omics analysis of ovarian cancer using variational autoencoders.

Scientific reports

Avec: Muta Tah Hira , M A Razzaque , Claudio Angione , James Scrivens , Saladin Sawan , Mosharraf Sarker

Multimodal regularized linear models with flux balance analysis for mechanistic integration of omics data.

Bioinformatics (Oxford, England)

Avec: Giuseppe Magazzù , Guido Zampieri , Claudio Angione

Genome-scale metabolic modelling of SARS-CoV-2 in cancer cells reveals an increased shift to glycolytic energy production.

FEBS letters

Avec: Elisabeth Yaneske , Guido Zampieri , Loris Bertoldi , Giuseppe Benvenuto , Claudio Angione

Situating agent-based modelling in population health research.

Emerging themes in epidemiology

Avec: Eric Silverman , Umberto Gostoli , Stefano Picascia , Jonatan Almagor , Mark McCann , Richard Shaw , Claudio Angione

Whole-genome sequencing and genome-scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use.

MicrobiologyOpen

Avec: Blaise Manga Enuh , Belma Nural Yaman , Chaimaa Tarzi , Pınar Aytar Çelik , Mehmet Burçin Mutlu , Claudio Angione

Clinical stratification improves the diagnostic accuracy of small omics datasets within machine learning and genome-scale metabolic modelling methods.

Computers in biology and medicine

Avec: Giuseppe Magazzù , Guido Zampieri , Claudio Angione

Mechanism-aware and multimodal AI: beyond model-agnostic interpretation.

Trends in cell biology

Avec: Annalisa Occhipinti , Suraj Verma , Le Minh Thao Doan , Claudio Angione

Glycosylation spectral signatures for glioma grade discrimination using Raman spectroscopy.

BMC cancer

Avec: Agathe Quesnel , Nathan Coles , Claudio Angione , Priyanka Dey , Tuomo M Polvikoski , Tiago F Outeiro , Meez Islam , Ahmad A Khundakar , Panagiota S Filippou

Emerging methods for genome-scale metabolic modeling of microbial communities.

Trends in endocrinology and metabolism: TEM

Avec: Chaimaa Tarzi , Guido Zampieri , Neil Sullivan , Claudio Angione

Réseau de co-auteurs

Claudio Angione 33 collaborations

Guido Zampieri 11 collaborations

Annalisa Occhipinti 7 collaborations

Supreeta Vijayakumar 6 collaborations

Giuseppe Magazzù 5 collaborations

Suraj Verma 4 collaborations

Elisabeth Yaneske 3 collaborations

Agathe Quesnel 3 collaborations

Nathan Coles 3 collaborations

Meez Islam 3 collaborations

Ahmad A Khundakar 3 collaborations

Panagiota S Filippou 3 collaborations

Chaimaa Tarzi 3 collaborations

Emma L Robinson 2 collaborations

None None 2 collaborations

Pattanathu K S M Rahman 2 collaborations

Claudio Urra 2 collaborations

Michael J Hurley 2 collaborations

Patricia Cogram 2 collaborations

Eric Silverman 2 collaborations

Le Minh Thao Doan 2 collaborations

Malgorzata Borczyk 2 collaborations

Michal Korostynski 2 collaborations

Tuomo M Polvikoski 2 collaborations

Tiago F Outeiro 2 collaborations

Blaise Manga Enuh 2 collaborations

Pınar Aytar Çelik 2 collaborations

Andrew H Baker 1 collaboration

Mairi Brittan 1 collaboration

Ian McCracken 1 collaboration

G Condorelli 1 collaboration

C Emanueli 1 collaboration

P K Srivastava 1 collaboration

C Gaetano 1 collaboration

T Thum 1 collaboration

M Vanhaverbeke 1 collaboration

S Heymans 1 collaboration

Y Devaux 1 collaboration

T Pedrazzini 1 collaboration

F Martelli 1 collaboration

Pradip Moon 1 collaboration

Noushin Eftekhari 1 collaboration

Thai Lou 1 collaboration

Alex Gilhespy 1 collaboration

Pallab Kar 1 collaboration

Md Moshfekus Saleh-E-In 1 collaboration

Nishika Jaishee 1 collaboration

Akash Anandraj 1 collaboration

Emil Kormuth 1 collaboration

Balachandar Vellingiri 1 collaboration

Suntheren Pillay 1 collaboration

Arnab Sen 1 collaboration

Devashan Naidoo 1 collaboration

Ayan Roy 1 collaboration

Yong E Choi 1 collaboration

Georgios Efthimiou 1 collaboration

Miron Sopic 1 collaboration

Costanza Emanueli 1 collaboration

Prashant Srivastava 1 collaboration

Carlo Gaetano 1 collaboration

Gianluigi Condorelli 1 collaboration

Fabio Martelli 1 collaboration

Thierry Pedrazzini 1 collaboration

Yvan Devaux 1 collaboration

Léa Cabrol 1 collaboration

Eduardo Castro-Nallar 1 collaboration

Guillaume Schwob 1 collaboration

David Cleary 1 collaboration

Robert M J Deacon 1 collaboration

Alessandro Di Stefano 1 collaboration

Marialisa Scatà 1 collaboration

Aurelio La Corte 1 collaboration

Pietro Liò 1 collaboration

Gianvito Pio 1 collaboration

Paolo Mignone 1 collaboration

Michelangelo Ceci 1 collaboration

Stefano Campanaro 1 collaboration

Laura Treu 1 collaboration

Nancy Alnassar 1 collaboration

Jacek Hajto 1 collaboration

Robin M H Rumney 1 collaboration

Chandrika Saha 1 collaboration

Janos Kanczler 1 collaboration

Arthur M Butt 1 collaboration

Joanna Pomeroy 1 collaboration

Dariusz C Górecki 1 collaboration

B Maximiliano Garduno 1 collaboration

Agostino Bruno 1 collaboration

Allison Kimbell 1 collaboration

Brent Wilkinson 1 collaboration

Cristina Marino-Buslje 1 collaboration

Marcelo Ezquer 1 collaboration

Fernando Ezquer 1 collaboration

Pedro F Aburto 1 collaboration

Elie Poulin 1 collaboration

Rodrigo A Vasquez 1 collaboration

Robert Deacon 1 collaboration

Ariel Avila 1 collaboration

Francisco Altimiras 1 collaboration

Peter Whitney Vanderklish 1 collaboration

Gabriele Constantino 1 collaboration

Todd C Holmes 1 collaboration

Marcelo P Coba 1 collaboration

Xiangmin Xu 1 collaboration

Maxime R F Gosselin 1 collaboration

Virginie Mournetas 1 collaboration

Justyna Róg 1 collaboration

Lukasz Bozycki 1 collaboration

Samuel C Robson 1 collaboration

Christian Pinset 1 collaboration

Dariusz C Gorecki 1 collaboration

George S Karagiannis 1 collaboration

Davide Chicco 1 collaboration

Fabio Cumbo 1 collaboration

Leya Danielle Martin 1 collaboration

Vasileios P Lenis 1 collaboration

Youssef Hamadi 1 collaboration

Hillel Kugler 1 collaboration

Christoph M Wintersteiger 1 collaboration

Boyan Yordanov 1 collaboration

Christopher Culley 1 collaboration

Muta Tah Hira 1 collaboration

M A Razzaque 1 collaboration

James Scrivens 1 collaboration

Saladin Sawan 1 collaboration

Mosharraf Sarker 1 collaboration

Loris Bertoldi 1 collaboration

Giuseppe Benvenuto 1 collaboration

Umberto Gostoli 1 collaboration

Stefano Picascia 1 collaboration

Jonatan Almagor 1 collaboration

Mark McCann 1 collaboration

Richard Shaw 1 collaboration

Belma Nural Yaman 1 collaboration

Mehmet Burçin Mutlu 1 collaboration

Priyanka Dey 1 collaboration

Neil Sullivan 1 collaboration