Daniela Calini

Affiliations

F. Hoffmann-La Roche Ltd., Pharma Research and Early Development, Neuroscience, Ophthalmology and Rare Diseases, Roche Innovation Center Basel, Basel, Switzerland.

Publications (10)

muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data.

Nature communications

Avec: Helena L Crowell , Charlotte Soneson , Pierre-Luc Germain , Daniela Calini , Ludovic Collin , Catarina Raposo , Dheeraj Malhotra , Mark D Robinson

Single-nucleus and spatial transcriptomic profiling of human temporal cortex and white matter reveals novel associations with AD pathology.

bioRxiv : the preprint server for biology

Avec: Pallavi Gaur , Julien Bryois , Daniela Calini , Lynette Foo , Jeroen J M Hoozemans , Dheeraj Malhotra , Vilas Menon

CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data.

Life science alliance

Avec: Almut Lütge , Joanna Zyprych-Walczak , Urszula Brykczynska Kunzmann , Helena L Crowell , Daniela Calini , Dheeraj Malhotra , Charlotte Soneson , Mark D Robinson

A structured evaluation of cryopreservation in generating single-cell transcriptomes from cerebrospinal fluid.

Cell reports methods

Avec: Hanane Touil , Tina Roostaei , Daniela Calini , Claudiu Diaconu , Samantha Epstein , Catarina Raposo , Kaho Onomichi , Kiran T Thakur , Licinio Craveiro , Ilaria Callegari , Julien Bryois , Claire S Riley , Vilas Menon , Tobias Derfuss , Philip L De Jager , Dheeraj Malhotra

Enrichment of Glial Cells From Human Post-mortem Tissue for Transcriptome and Proteome Analysis Using Immunopanning.

Frontiers in cellular neuroscience

Avec: Anna Nolle , Irene van Dijken , Ciril M Waelti , Daniela Calini , Julien Bryois , Emmanuelle Lezan , Sabrina Golling , Angelique Augustin , Lynette Foo , Jeroen J M Hoozemans

Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility.

Neuron

Avec: Mandy Meijer , Eneritz Agirre , Mukund Kabbe , Cassandra A van Tuijn , Abeer Heskol , Chao Zheng , Ana Mendanha Falcão , Marek Bartosovic , Leslie Kirby , Daniela Calini , Michael R Johnson , M Ryan Corces , Thomas J Montine , Xingqi Chen , Howard Y Chang , Dheeraj Malhotra , Gonçalo Castelo-Branco

Frontiers in aging neuroscience

Avec: Cinzia Tiloca , Stefano Goldwurm , Narghes Calcagno , Federico Verde , Silvia Peverelli , Daniela Calini , Anna Lena Zecchinelli , Davide Sangalli , Antonia Ratti , Gianni Pezzoli , Vincenzo Silani , Nicola Ticozzi

Cell-type-specific cis-eQTLs in eight human brain cell types identify novel risk genes for psychiatric and neurological disorders.

Nature neuroscience

Avec: Julien Bryois , Daniela Calini , Will Macnair , Lynette Foo , Eduard Urich , Ward Ortmann , Victor Alejandro Iglesias , Suresh Selvaraj , Erik Nutma , Manuel Marzin , Sandra Amor , Anna Williams , Gonçalo Castelo-Branco , Vilas Menon , Philip De Jager , Dheeraj Malhotra

Disease-specific selective vulnerability and neuroimmune pathways in dementia revealed by single cell genomics.

bioRxiv : the preprint server for biology

Avec: Jessica E Rexach , Yuyan Cheng , Lawrence Chen , Damon Polioudakis , Li-Chun Lin , Vivianne Mitri , Andrew Elkins , Anna Yin , Daniela Calini , Riki Kawaguchi , Jing Ou , Jerry Huang , Christopher Williams , John Robinson , Stephanie E Gaus , Salvatore Spina , Edward B Lee , Lea T Grinberg , Harry Vinters , John Q Trojanowski , William W Seeley , Dheeraj Malhotra , Daniel H Geschwind

Cross-disorder and disease-specific pathways in dementia revealed by single-cell genomics.

Cell

Avec: Jessica E Rexach , Yuyan Cheng , Lawrence Chen , Damon Polioudakis , Li-Chun Lin , Vivianne Mitri , Andrew Elkins , Xia Han , Mai Yamakawa , Anna Yin , Daniela Calini , Riki Kawaguchi , Jing Ou , Jerry Huang , Christopher Williams , John Robinson , Stephanie E Gaus , Salvatore Spina , Edward B Lee , Lea T Grinberg , Harry Vinters , John Q Trojanowski , William W Seeley , Dheeraj Malhotra , Daniel H Geschwind

Réseau de co-auteurs

Dheeraj Malhotra 8 collaborations

Julien Bryois 4 collaborations

Lynette Foo 3 collaborations

Vilas Menon 3 collaborations

Helena L Crowell 2 collaborations

Charlotte Soneson 2 collaborations

Catarina Raposo 2 collaborations

Mark D Robinson 2 collaborations

Jeroen J M Hoozemans 2 collaborations

Gonçalo Castelo-Branco 2 collaborations

Jessica E Rexach 2 collaborations

Yuyan Cheng 2 collaborations

Lawrence Chen 2 collaborations

Damon Polioudakis 2 collaborations

Li-Chun Lin 2 collaborations

Vivianne Mitri 2 collaborations

Andrew Elkins 2 collaborations

Anna Yin 2 collaborations

Riki Kawaguchi 2 collaborations

Jing Ou 2 collaborations

Jerry Huang 2 collaborations

Christopher Williams 2 collaborations

John Robinson 2 collaborations

Stephanie E Gaus 2 collaborations

Salvatore Spina 2 collaborations

Edward B Lee 2 collaborations

Lea T Grinberg 2 collaborations

Harry Vinters 2 collaborations

John Q Trojanowski 2 collaborations

William W Seeley 2 collaborations

Daniel H Geschwind 2 collaborations

Pierre-Luc Germain 1 collaboration

Ludovic Collin 1 collaboration

Pallavi Gaur 1 collaboration

Almut Lütge 1 collaboration

Joanna Zyprych-Walczak 1 collaboration

Urszula Brykczynska Kunzmann 1 collaboration

Hanane Touil 1 collaboration

Tina Roostaei 1 collaboration

Claudiu Diaconu 1 collaboration

Samantha Epstein 1 collaboration

Kaho Onomichi 1 collaboration

Kiran T Thakur 1 collaboration

Licinio Craveiro 1 collaboration

Ilaria Callegari 1 collaboration

Claire S Riley 1 collaboration

Tobias Derfuss 1 collaboration

Philip L De Jager 1 collaboration

Anna Nolle 1 collaboration

Irene van Dijken 1 collaboration

Ciril M Waelti 1 collaboration

Emmanuelle Lezan 1 collaboration

Sabrina Golling 1 collaboration

Angelique Augustin 1 collaboration

Mandy Meijer 1 collaboration

Eneritz Agirre 1 collaboration

Mukund Kabbe 1 collaboration

Cassandra A van Tuijn 1 collaboration

Abeer Heskol 1 collaboration

Chao Zheng 1 collaboration

Ana Mendanha Falcão 1 collaboration

Marek Bartosovic 1 collaboration

Leslie Kirby 1 collaboration

Michael R Johnson 1 collaboration

M Ryan Corces 1 collaboration

Thomas J Montine 1 collaboration

Xingqi Chen 1 collaboration

Howard Y Chang 1 collaboration

Cinzia Tiloca 1 collaboration

Stefano Goldwurm 1 collaboration

Narghes Calcagno 1 collaboration

Federico Verde 1 collaboration

Silvia Peverelli 1 collaboration

Anna Lena Zecchinelli 1 collaboration

Davide Sangalli 1 collaboration

Antonia Ratti 1 collaboration

Gianni Pezzoli 1 collaboration

Vincenzo Silani 1 collaboration

Nicola Ticozzi 1 collaboration

Will Macnair 1 collaboration

Eduard Urich 1 collaboration

Ward Ortmann 1 collaboration

Victor Alejandro Iglesias 1 collaboration

Suresh Selvaraj 1 collaboration

Erik Nutma 1 collaboration

Manuel Marzin 1 collaboration

Sandra Amor 1 collaboration

Anna Williams 1 collaboration

Philip De Jager 1 collaboration

Xia Han 1 collaboration

Mai Yamakawa 1 collaboration