David E Clemmer

Affiliations

Department of Chemistry, Indiana University, 800 Kirkwood Avenue, Bloomington, IN 47401, USA.

Publications (52)

Solid-state packing dictates the unexpected solubility of aromatic peptides.

Cell reports. Physical science

Avec: Santu Bera , Xuewei Dong , Bankala Krishnarjuna , Shannon A Raab , David A Hales , Wei Ji , Yiming Tang , Linda J W Shimon , Ayyalusamy Ramamoorthy , David E Clemmer , Guanghong Wei , Ehud Gazit

Solvent Mediation of Peptide Conformations: Polyproline Structures in Water, Methanol, Ethanol, and 1-Propanol as Determined by Ion Mobility Spectrometry-Mass Spectrometry.

Journal of the American Society for Mass Spectrometry

Avec: Tarick J El-Baba , Daniel R Fuller , David A Hales , David H Russell , David E Clemmer

Dissecting the Components of Sindbis Virus from Arthropod and Vertebrate Hosts: Implications for Infectivity Differences.

ACS infectious diseases

Avec: Carmen A Dunbar , Vamseedhar Rayaprolu , Joseph C-Y Wang , Christopher J Brown , Emma Leishman , Sara Jones-Burrage , Jonathan C Trinidad , Heather B Bradshaw , David E Clemmer , Suchetana Mukhopadhyay , Martin F Jarrold

Understanding the Thermal Denaturation of Myoglobin with IMS-MS: Evidence for Multiple Stable Structures and Trapped Pre-equilibrium States.

Journal of the American Society for Mass Spectrometry

Avec: Daniel W Woodall , Lucas W Henderson , Shannon A Raab , Kenji Honma , David E Clemmer

Variation of CI-2 Conformers upon Addition of Methanol to Water: An IMS-MS-Based Thermodynamic Analysis.

The journal of physical chemistry. A

Avec: Hua Pan , Shannon A Raab , Tarick J El-Baba , Samantha R Schrecke , Arthur Laganowsky , David H Russell , David E Clemmer

A microdroplet-accelerated Biginelli reaction: mechanisms and separation of isomers using IMS-MS.

Chemical science

Avec: Navneet Sahota , Deyaa I AbuSalim , Melinda L Wang , Christopher J Brown , Zhicaho Zhang , Tarick J El-Baba , Silas P Cook , David E Clemmer

Comparison of gaseous ubiquitin ion structures obtained from a solid and solution matrix using ion mobility spectrometry/mass spectrometry.

Rapid communications in mass spectrometry : RCM

Avec: Ellen D Inutan , Dean R Jarois , Christopher B Lietz , Tarick J El-Baba , Efstathios A Elia , Santosh Karki , Andjoe A S Sampat , Casey D Foley , David E Clemmer , Sarah Trimpin

Evidence for Many Unique Solution Structures for Chymotrypsin Inhibitor 2: A Thermodynamic Perspective Derived from vT-ESI-IMS-MS Measurements.

Journal of the American Chemical Society

Avec: Shannon A Raab , Tarick J El-Baba , Daniel W Woodall , Wen Liu , Yang Liu , Zane Baird , David A Hales , Arthur Laganowsky , David H Russell , David E Clemmer

Identification and Structural Characterization of Novel Chondroitin/Dermatan Sulfate Hexassacharide Domains in Human Decorin by Ion Mobility Tandem Mass Spectrometry.

Molecules (Basel, Switzerland)

Avec: Mirela Sarbu , Raluca Ica , Edie Sharon , David E Clemmer , Alina D Zamfir

Glycomics by ion mobility tandem mass spectrometry of chondroitin sulfate disaccharide domain in biglycan.

Journal of mass spectrometry : JMS

Avec: Mirela Sarbu , Raluca Ica , Edie Sharon , David E Clemmer , Alina D Zamfir

CDMS Analysis of Intact 19S, 20S, 26S, and 30S Proteasomes: Evidence for Higher-Order 20S Assemblies at a Low pH†.

Analytical chemistry

Avec: Adam J Anthony , Amit K S Gautam , Lohra M Miller , Yiran Ma , Anya G Hardwick , Anu Sharma , Subhadip Ghatak , Andreas Matouschek , Martin F Jarrold , David E Clemmer

Tautomerization of H

The journal of physical chemistry. A

Avec: Daniel Beckett , Tarick J El-Baba , Zhichao Zhang , David E Clemmer , Krishnan Raghavachari

Diastereomer Characterization of PS-Modified Synthetic Oligonucleotides Using Cyclic IMS-MS.

Analytical chemistry

Avec: Edie M Sharon , Sarah M O'Keefe , Kathleen T Grassmyer , Shannon A Raab , Todd D Maloney , David E Clemmer

Characterizing Thermal Transitions of IgG with Mass Spectrometry.

Journal of the American Society for Mass Spectrometry

Avec: Christopher J Brown , Daniel W Woodall , Tarick J El-Baba , David E Clemmer

Substance P in Solution: Trans-to-Cis Configurational Changes of Penultimate Prolines Initiate Non-enzymatic Peptide Bond Cleavages.

Journal of the American Society for Mass Spectrometry

Avec: Christopher R Conant , Daniel R Fuller , Tarick J El-Baba , Zhichao Zhang , David H Russell , David E Clemmer

Intrinsic GTPase Activity of K-RAS Monitored by Native Mass Spectrometry.

Biochemistry

Avec: Zahra Moghadamchargari , Jamison Huddleston , Mehdi Shirzadeh , Xueyun Zheng , David E Clemmer , Frank M Raushel , David H Russell , Arthur Laganowsky

Monitoring the stabilities of a mixture of peptides by mass-spectrometry-based techniques.

European journal of mass spectrometry (Chichester, England)

Avec: Daniel R Fuller , Christopher R Conant , Tarick J El-Baba , Zhichao Zhang , Kameron R Molloy , Connie S Zhang , David A Hales , David E Clemmer

Solution thermochemistry of concanavalin A tetramer conformers measured by variable-temperature ESI-IMS-MS.

International journal of mass spectrometry

Avec: Tarick J El-Baba , David E Clemmer

Resolving Isomers of Star-Branched Poly(Ethylene Glycols) by IMS-MS Using Multiply Charged Ions.

Journal of the American Society for Mass Spectrometry

Avec: Calvin A Austin , Ellen D Inutan , Brian C Bohrer , Jing Li , Joshua L Fischer , Kanchana Wijerathne , Casey D Foley , Christopher B Lietz , Daniel W Woodall , Lorelie F Imperial , David E Clemmer , Sarah Trimpin , Barbara S Larsen

Protons Are Fast and Smart; Proteins Are Slow and Dumb: On the Relationship of Electrospray Ionization Charge States and Conformations.

Journal of the American Society for Mass Spectrometry

Avec: Shannon A Raab , Tarick J El-Baba , Arthur Laganowsky , David H Russell , Stephen J Valentine , David E Clemmer

Thermal Analysis of a Mixture of Ribosomal Proteins by vT-ESI-MS: Toward a Parallel Approach for Characterizing the

Analytical chemistry

Avec: Tarick J El-Baba , Shannon A Raab , Rachel P Buckley , Christopher J Brown , Corinne A Lutomski , Lucas W Henderson , Daniel W Woodall , Jiangchuan Shen , Jonathan C Trinidad , Hengyao Niu , Martin F Jarrold , David H Russell , Arthur Laganowsky , David E Clemmer

Temperature Regulates Stability, Ligand Binding (Mg

Journal of the American Chemical Society

Avec: Thomas E Walker , Mehdi Shirzadeh , He Mirabel Sun , Jacob W McCabe , Andrew Roth , Zahra Moghadamchargari , David E Clemmer , Arthur Laganowsky , Hays Rye , David H Russell

Stability of 20S Proteasome Configurations: Preopening the Axial Gate.

The journal of physical chemistry letters

Avec: Lucas W Henderson , Edie M Sharon , Amit K S Gautam , Adam J Anthony , Martin F Jarrold , David H Russell , Andreas Matouschek , David E Clemmer

Introducing Ion Mobility Mass Spectrometry in Brain Glycosaminoglycomics: Application to Chondroitin/Dermatan Sulfate Octasaccharide Domains.

Journal of the American Society for Mass Spectrometry

Avec: Mirela Sarbu , Daniela G Seidler , David E Clemmer , Alina D Zamfir

Charge Detection Mass Spectrometry Measurements of Exosomes and other Extracellular Particles Enriched from Bovine Milk.

Analytical chemistry

Avec: Brooke A Brown , Xuyao Zeng , Aaron R Todd , Lauren F Barnes , Jonathan M A Winstone , Jonathan C Trinidad , Milos V Novotny , Martin F Jarrold , David E Clemmer

Variable-Temperature ESI-IMS-MS Analysis of Myohemerythrin Reveals Ligand Losses, Unfolding, and a Non-Native Disulfide Bond.

Analytical chemistry

Avec: Daniel W Woodall , Tarick J El-Baba , Daniel R Fuller , Wen Liu , Christopher J Brown , Arthur Laganowsky , David H Russell , David E Clemmer

Substance P in the Gas Phase: Conformational Changes and Dissociations Induced by Collisional Activation in a Drift Tube.

Journal of the American Society for Mass Spectrometry

Avec: Christopher R Conant , Daniel R Fuller , Zhichao Zhang , Daniel W Woodall , David H Russell , David E Clemmer

Untangling Hydrogen Bond Networks with Ion Mobility Spectrometry and Quantum Chemical Calculations: A Case Study on H

The journal of physical chemistry. B

Avec: Daniel Beckett , Tarick J El-Baba , Kevin Gilbert , David E Clemmer , Krishnan Raghavachari

Glycoproteomic Analysis of Human Urinary Exosomes.

Analytical chemistry

Avec: Christopher J Brown , Stefan Gaunitz , Ziyu Wang , Lena Strindelius , Stephen C Jacobson , David E Clemmer , Jonathan C Trinidad , Milos V Novotny

Gangliosides of Human Glioblastoma Multiforme: A Comprehensive Mapping and Structural Analysis by Ion Mobility Tandem Mass Spectrometry.

Journal of the American Society for Mass Spectrometry

Avec: Mirela Sarbu , Ligia Petrica , David E Clemmer , Željka Vukelić , Alina D Zamfir

Variable-Temperature Electrospray Ionization for Temperature-Dependent Folding/Refolding Reactions of Proteins and Ligand Binding.

Analytical chemistry

Avec: Jacob W McCabe , Mehdi Shirzadeh , Thomas E Walker , Cheng-Wei Lin , Benjamin J Jones , Vicki H Wysocki , David P Barondeau , David E Clemmer , Arthur Laganowsky , David H Russell

Exosome-Mediated Crosstalk between Keratinocytes and Macrophages in Cutaneous Wound Healing.

ACS nano

Avec: Xiaoju Zhou , Brooke A Brown , Amanda P Siegel , Mohamed S El Masry , Xuyao Zeng , Woran Song , Amitava Das , Puneet Khandelwal , Andrew Clark , Kanhaiya Singh , Poornachander R Guda , Mahadeo Gorain , Lava Timsina , Yi Xuan , Stephen C Jacobson , Milos V Novotny , Sashwati Roy , Mangilal Agarwal , Robert J Lee , Chandan K Sen , David E Clemmer , Subhadip Ghatak

Ion mobility mass spectrometry of human melanoma gangliosides.

Biochimie

Avec: Mirela Sarbu , David E Clemmer , Alina D Zamfir

Analysis of Keratinocytic Exosomes from Diabetic and Nondiabetic Mice by Charge Detection Mass Spectrometry.

Analytical chemistry

Avec: Brooke A Brown , Poornachander R Guda , Xuyao Zeng , Adam Anthony , Andrew Couse , Lauren F Barnes , Edie M Sharon , Jonathan C Trinidad , Chandan K Sen , Martin F Jarrold , Subhadip Ghatak , David E Clemmer

Influence of N Terminus Amino Acid on Peptide Cleavage in Solution through Diketopiperazine Formation.

Journal of the American Society for Mass Spectrometry

Avec: Zhi-Chao Zhang , David A Hales , David E Clemmer

Resolving Hidden Solution Conformations of Hemoglobin Using IMS-IMS on a Cyclic Instrument.

Journal of the American Society for Mass Spectrometry

Avec: Edie M Sharon , Lucas W Henderson , David E Clemmer

Human Cerebellum Gangliosides: A Comprehensive Analysis by Ion Mobility Tandem Mass Spectrometry.

Journal of the American Society for Mass Spectrometry

Avec: Maria Roxana Biricioiu , Mirela Sarbu , Raluca Ica , Željka Vukelić , David E Clemmer , Alina D Zamfir

Structural Insights into Linkage-Specific Ubiquitin Chains Using Ion Mobility Mass Spectrometry.

Journal of the American Society for Mass Spectrometry

Avec: Ji Eun Jung , Michael A Ewing , Stephen J Valentine , David E Clemmer

Melting of Hemoglobin in Native Solutions as measured by IMS-MS.

Analytical chemistry

Avec: Daniel W Woodall , Christopher J Brown , Shannon A Raab , Tarick J El-Baba , Arthur Laganowsky , David H Russell , David E Clemmer

Determination of Gas-Phase Ion Structures of Locally Polar Homopolymers Through High-Resolution Ion Mobility Spectrometry-Mass Spectrometry.

Journal of the American Society for Mass Spectrometry

Avec: Xi Chen , Shannon A Raab , Timothy Poe , David E Clemmer , Carlos Larriba-Andaluz

Cerebrospinal fluid: Profiling and fragmentation of gangliosides by ion mobility mass spectrometry.

Biochimie

Avec: Mirela Sarbu , Shannon Raab , Lucas Henderson , Dragana Fabris , Željka Vukelić , David E Clemmer , Alina D Zamfir

Variable-Temperature Native Mass Spectrometry for Studies of Protein Folding, Stabilities, Assembly, and Molecular Interactions.

Annual review of biophysics

Avec: Arthur Laganowsky , David E Clemmer , David H Russell

A graphical representation of glycan heterogeneity.

Glycobiology

Avec: Xuyao Zeng , Milos V Novotny , David E Clemmer , Jonathan C Trinidad

Heterogeneity of Glycan Processing on Trimeric SARS-CoV-2 Spike Protein Revealed by Charge Detection Mass Spectrometry.

Journal of the American Chemical Society

Avec: Lohra M Miller , Lauren F Barnes , Shannon A Raab , Benjamin E Draper , Tarick J El-Baba , Corinne A Lutomski , Carol V Robinson , David E Clemmer , Martin F Jarrold

Influence of Solvents upon Diketopiperazine Formation of FPG

The journal of physical chemistry. B

Avec: Zhi-Chao Zhang , Shannon A Raab , David A Hales , David E Clemmer

Diketopiperazine Formation from FPG

The journal of physical chemistry. B

Avec: Zhichao Zhang , Christopher R Conant , Tarick J El-Baba , Shannon A Raab , Daniel R Fuller , David A Hales , David E Clemmer

Ion Mobility Mass Spectrometry Reveals Rare Sialylated Glycosphingolipid Structures in Human Cerebrospinal Fluid.

Molecules (Basel, Switzerland)

Avec: Mirela Sarbu , Dragana Fabris , Željka Vukelić , David E Clemmer , Alina D Zamfir

Bortezomib Inhibits Open Configurations of the 20S Proteasome.

Journal of the American Society for Mass Spectrometry

Avec: Lucas W Henderson , Amit K S Gautam , Edie M Sharon , Colin R Johnson , Nicholas G Rommel , Adam J Anthony , David H Russell , Martin F Jarrold , Andreas Matouschek , David E Clemmer

Nanoscopic and Functional Characterization of Keratinocyte-Originating Exosomes in the Wound Fluid of Non-Diabetic and Diabetic Chronic Wound Patients.

Nano today

Avec: Poornachander R Guda , Anu Sharma , Adam J Anthony , Mohamed S ElMasry , Andrew D Couse , Piya Das Ghatak , Amitava Das , Lava Timsina , Jonathan C Trinidad , Sashwati Roy , David E Clemmer , Chandan K Sen , Subhadip Ghatak

Delineating Bovine Milk Derived Microvesicles from Exosomes Using Proteomics.

Journal of proteome research

Avec: Andrew D Couse , Sarah J Cox-Vazquez , Subhadip Ghatak , Jonathan C Trinidad , David E Clemmer

Thermal Remodeling of Human HDL Particles Reveals Diverse Subspecies.

Journal of the American Society for Mass Spectrometry

Avec: Corinne A Lutomski , Tarick J El-Baba , David E Clemmer , Martin F Jarrold

Mitochondrial Bioenergetics of Functional Wound Closure is Dependent on Macrophage-Keratinocyte Exosomal Crosstalk.

ACS nano

Avec: Anu Sharma , Rajneesh Srivastava , Surya C Gnyawali , Pramod Bhasme , Adam J Anthony , Yi Xuan , Jonathan C Trinidad , Chandan K Sen , David E Clemmer , Sashwati Roy , Subhadip Ghatak

Réseau de co-auteurs

Tarick J El-Baba 18 collaborations

David H Russell 15 collaborations

Shannon A Raab 12 collaborations

Arthur Laganowsky 10 collaborations

Jonathan C Trinidad 9 collaborations

Martin F Jarrold 9 collaborations

Daniel W Woodall 8 collaborations

Mirela Sarbu 8 collaborations

Alina D Zamfir 8 collaborations

David A Hales 7 collaborations

Christopher J Brown 7 collaborations

Daniel R Fuller 6 collaborations

Subhadip Ghatak 6 collaborations

Lucas W Henderson 5 collaborations

Adam J Anthony 5 collaborations

Zhichao Zhang 5 collaborations

Edie M Sharon 5 collaborations

Christopher R Conant 4 collaborations

Xuyao Zeng 4 collaborations

Milos V Novotny 4 collaborations

Željka Vukelić 4 collaborations

Chandan K Sen 4 collaborations

Raluca Ica 3 collaborations

Amit K S Gautam 3 collaborations

Anu Sharma 3 collaborations

Andreas Matouschek 3 collaborations

Mehdi Shirzadeh 3 collaborations

Corinne A Lutomski 3 collaborations

Brooke A Brown 3 collaborations

Lauren F Barnes 3 collaborations

Poornachander R Guda 3 collaborations

Sashwati Roy 3 collaborations

Ellen D Inutan 2 collaborations

Christopher B Lietz 2 collaborations

Casey D Foley 2 collaborations

Sarah Trimpin 2 collaborations

Wen Liu 2 collaborations

Edie Sharon 2 collaborations

Lohra M Miller 2 collaborations

Daniel Beckett 2 collaborations

Krishnan Raghavachari 2 collaborations

Zahra Moghadamchargari 2 collaborations

Stephen J Valentine 2 collaborations

Thomas E Walker 2 collaborations

Jacob W McCabe 2 collaborations

Stephen C Jacobson 2 collaborations

Amitava Das 2 collaborations

Lava Timsina 2 collaborations

Yi Xuan 2 collaborations

Zhi-Chao Zhang 2 collaborations

Dragana Fabris 2 collaborations

Andrew D Couse 2 collaborations

Santu Bera 1 collaboration

Xuewei Dong 1 collaboration

Bankala Krishnarjuna 1 collaboration

Wei Ji 1 collaboration

Yiming Tang 1 collaboration

Linda J W Shimon 1 collaboration

Ayyalusamy Ramamoorthy 1 collaboration

Guanghong Wei 1 collaboration

Ehud Gazit 1 collaboration

Carmen A Dunbar 1 collaboration

Vamseedhar Rayaprolu 1 collaboration

Joseph C-Y Wang 1 collaboration

Emma Leishman 1 collaboration

Sara Jones-Burrage 1 collaboration

Heather B Bradshaw 1 collaboration

Suchetana Mukhopadhyay 1 collaboration

Kenji Honma 1 collaboration

Hua Pan 1 collaboration

Samantha R Schrecke 1 collaboration

Navneet Sahota 1 collaboration

Deyaa I AbuSalim 1 collaboration

Melinda L Wang 1 collaboration

Zhicaho Zhang 1 collaboration

Silas P Cook 1 collaboration

Dean R Jarois 1 collaboration

Efstathios A Elia 1 collaboration

Santosh Karki 1 collaboration

Andjoe A S Sampat 1 collaboration

Yang Liu 1 collaboration

Zane Baird 1 collaboration

Yiran Ma 1 collaboration

Anya G Hardwick 1 collaboration

Sarah M O'Keefe 1 collaboration

Kathleen T Grassmyer 1 collaboration

Todd D Maloney 1 collaboration

Jamison Huddleston 1 collaboration

Xueyun Zheng 1 collaboration

Frank M Raushel 1 collaboration

Kameron R Molloy 1 collaboration

Connie S Zhang 1 collaboration

Calvin A Austin 1 collaboration

Brian C Bohrer 1 collaboration

Jing Li 1 collaboration

Joshua L Fischer 1 collaboration

Kanchana Wijerathne 1 collaboration

Lorelie F Imperial 1 collaboration

Barbara S Larsen 1 collaboration

Rachel P Buckley 1 collaboration

Jiangchuan Shen 1 collaboration

Hengyao Niu 1 collaboration

He Mirabel Sun 1 collaboration

Andrew Roth 1 collaboration

Hays Rye 1 collaboration

Daniela G Seidler 1 collaboration

Aaron R Todd 1 collaboration

Jonathan M A Winstone 1 collaboration

Kevin Gilbert 1 collaboration

Stefan Gaunitz 1 collaboration

Ziyu Wang 1 collaboration

Lena Strindelius 1 collaboration

Ligia Petrica 1 collaboration

Cheng-Wei Lin 1 collaboration

Benjamin J Jones 1 collaboration

Vicki H Wysocki 1 collaboration

David P Barondeau 1 collaboration

Xiaoju Zhou 1 collaboration

Amanda P Siegel 1 collaboration

Mohamed S El Masry 1 collaboration

Woran Song 1 collaboration

Puneet Khandelwal 1 collaboration

Andrew Clark 1 collaboration

Kanhaiya Singh 1 collaboration

Mahadeo Gorain 1 collaboration

Mangilal Agarwal 1 collaboration

Robert J Lee 1 collaboration

Adam Anthony 1 collaboration

Andrew Couse 1 collaboration

Maria Roxana Biricioiu 1 collaboration

Ji Eun Jung 1 collaboration

Michael A Ewing 1 collaboration

Xi Chen 1 collaboration

Timothy Poe 1 collaboration

Carlos Larriba-Andaluz 1 collaboration

Shannon Raab 1 collaboration

Lucas Henderson 1 collaboration

Benjamin E Draper 1 collaboration

Carol V Robinson 1 collaboration

Colin R Johnson 1 collaboration

Nicholas G Rommel 1 collaboration

Mohamed S ElMasry 1 collaboration

Piya Das Ghatak 1 collaboration

Sarah J Cox-Vazquez 1 collaboration

Rajneesh Srivastava 1 collaboration

Surya C Gnyawali 1 collaboration

Pramod Bhasme 1 collaboration