Dharmesh D Bhuva

Affiliations

Division of Bioinformatics, Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.
School of Mathematics and Statistics, Faculty of Science, University of Melbourne, Parkville, VIC 3010, Australia.

Publications (12)

Stable gene expression for normalisation and single-sample scoring.

Nucleic acids research

Avec: Dharmesh D Bhuva , Joseph Cursons , Melissa J Davis

Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma.

Genome medicine

Avec: Laura A Genovesi , Amanda Millar , Elissa Tolson , Matthew Singleton , Emily Hassall , Marija Kojic , Caterina Brighi , Emily Girard , Clara Andradas , Mani Kuchibhotla , Dharmesh D Bhuva , Raelene Endersby , Nicholas G Gottardo , Anne Bernard , Christelle Adolphe , James M Olson , Michael D Taylor , Melissa J Davis , Brandon J Wainwright

Spatial transcriptomic analysis of Sonic hedgehog medulloblastoma identifies that the loss of heterogeneity and promotion of differentiation underlies the response to CDK4/6 inhibition.

Genome medicine

Avec: Tuan Vo , Brad Balderson , Kahli Jones , Guiyan Ni , Joanna Crawford , Amanda Millar , Elissa Tolson , Matthew Singleton , Marija Kojic , Thomas Robertson , Shaun Walters , Onkar Mulay , Dharmesh D Bhuva , Melissa J Davis , Brandon J Wainwright , Quan Nguyen , Laura A Genovesi

vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis.

BMC bioinformatics

Avec: Dharmesh D Bhuva , Chin Wee Tan , Ning Liu , Holly J Whitfield , Nicholas Papachristos , Samuel C Lee , Malvika Kharbanda , Ahmed Mohamed , Melissa J Davis

vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis.

Nucleic acids research

Avec: Ahmed Mohamed , Dharmesh D Bhuva , Sam Lee , Ning Liu , Chin Wee Tan , Melissa J Davis

In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection.

EBioMedicine

Avec: Chin Wee Tan , Jinjin Chen , Ning Liu , Dharmesh D Bhuva , Tony Blick , James Monkman , Caroline Cooper , Malvika Kharbanda , Kristen Feher , Belinda Phipson , Emily E Killingbeck , Liuliu Pan , Youngmi Kim , Yan Liang , Andy Nam , Michael Leon , Paulo Souza-Fonseca-Guimaraes , Seigo Nagashima , Ana Paula Camargo Martins , Cleber Machado-Souza , Lucia de Noronha , Benjamin Tang , Kirsty Short , John Fraser , Gabrielle T Belz , Fernando Souza-Fonseca-Guimaraes , Arutha Kulasinghe , Melissa J Davis

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer.

Genome biology

Avec: Dharmesh D Bhuva , Joseph Cursons , Gordon K Smyth , Melissa J Davis

Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures.

The European respiratory journal

Avec: Arutha Kulasinghe , Chin Wee Tan , Anna Flavia Ribeiro Dos Santos Miggiolaro , James Monkman , Habib SadeghiRad , Dharmesh D Bhuva , Jarbas da Silva Motta Junior , Caroline Busatta Vaz de Paula , Seigo Nagashima , Cristina Pellegrino Baena , Paulo Souza-Fonseca-Guimaraes , Lucia de Noronha , Timothy McCulloch , Gustavo Rodrigues Rossi , Caroline Cooper , Benjamin Tang , Kirsty R Short , Melissa J Davis , Fernando Souza-Fonseca-Guimaraes , Gabrielle T Belz , Ken O'Byrne

Implementation of DNA Methylation Array Profiling in Pediatric Central Nervous System Tumors: The AIM BRAIN Project: An Australian and New Zealand Children's Haematology/Oncology Group Study.

The Journal of molecular diagnostics : JMD

Avec: Christine L White , Kathryn M Kinross , Molly K Moore , Elnaz Rasouli , Robyn Strong , Janelle M Jones , Jason E Cain , Dominik Sturm , Felix Sahm , David T W Jones , Stefan M Pfister , Thomas Robertson , Colleen D'Arcy , Michael L Rodriguez , Jason M Dyke , Reimar Junckerstorff , Dharmesh D Bhuva , Melissa J Davis , Paul Wood , Tim Hassall , David S Ziegler , Stewart Kellie , Geoffrey McCowage , Frank Alvaro , Maria Kirby , John A Heath , Karen Tsui , Andrew Dodgshun , David D Eisenstat , Dong-Anh Khuong-Quang , Meaghan Wall , Elizabeth M Algar , Nicholas G Gottardo , Jordan R Hansford

Library size confounds biology in spatial transcriptomics data.

Genome biology

Avec: Dharmesh D Bhuva , Chin Wee Tan , Agus Salim , Claire Marceaux , Marie A Pickering , Jinjin Chen , Malvika Kharbanda , Xinyi Jin , Ning Liu , Kristen Feher , Givanna Putri , Wayne D Tilley , Theresa E Hickey , Marie-Liesse Asselin-Labat , Belinda Phipson , Melissa J Davis

Using singscore to predict mutations in acute myeloid leukemia from transcriptomic signatures.

F1000Research

Avec: Dharmesh D Bhuva , Momeneh Foroutan , Yi Xie , Ruqian Lyu , Joseph Cursons , Melissa J Davis

Computational Screening of Anti-Cancer Drugs Identifies a New BRCA Independent Gene Expression Signature to Predict Breast Cancer Sensitivity to Cisplatin.

Cancers

Avec: Jean Berthelet , Momeneh Foroutan , Dharmesh D Bhuva , Holly J Whitfield , Farrah El-Saafin , Joseph Cursons , Antonin Serrano , Michal Merdas , Elgene Lim , Emmanuelle Charafe-Jauffret , Christophe Ginestier , Matthias Ernst , Frédéric Hollande , Robin L Anderson , Bhupinder Pal , Belinda Yeo , Melissa J Davis , Delphine Merino

Réseau de co-auteurs

Melissa J Davis 12 collaborations

Chin Wee Tan 5 collaborations

Joseph Cursons 4 collaborations

Ning Liu 4 collaborations

Malvika Kharbanda 3 collaborations

Laura A Genovesi 2 collaborations

Amanda Millar 2 collaborations

Elissa Tolson 2 collaborations

Matthew Singleton 2 collaborations

Marija Kojic 2 collaborations

Nicholas G Gottardo 2 collaborations

Brandon J Wainwright 2 collaborations

Thomas Robertson 2 collaborations

Holly J Whitfield 2 collaborations

Ahmed Mohamed 2 collaborations

Jinjin Chen 2 collaborations

James Monkman 2 collaborations

Caroline Cooper 2 collaborations

Kristen Feher 2 collaborations

Belinda Phipson 2 collaborations

Paulo Souza-Fonseca-Guimaraes 2 collaborations

Seigo Nagashima 2 collaborations

Lucia de Noronha 2 collaborations

Benjamin Tang 2 collaborations

Gabrielle T Belz 2 collaborations

Fernando Souza-Fonseca-Guimaraes 2 collaborations

Arutha Kulasinghe 2 collaborations

Momeneh Foroutan 2 collaborations

Emily Hassall 1 collaboration

Caterina Brighi 1 collaboration

Emily Girard 1 collaboration

Clara Andradas 1 collaboration

Mani Kuchibhotla 1 collaboration

Raelene Endersby 1 collaboration

Anne Bernard 1 collaboration

Christelle Adolphe 1 collaboration

James M Olson 1 collaboration

Michael D Taylor 1 collaboration

Tuan Vo 1 collaboration

Brad Balderson 1 collaboration

Kahli Jones 1 collaboration

Guiyan Ni 1 collaboration

Joanna Crawford 1 collaboration

Shaun Walters 1 collaboration

Onkar Mulay 1 collaboration

Quan Nguyen 1 collaboration

Nicholas Papachristos 1 collaboration

Samuel C Lee 1 collaboration

Sam Lee 1 collaboration

Tony Blick 1 collaboration

Emily E Killingbeck 1 collaboration

Liuliu Pan 1 collaboration

Youngmi Kim 1 collaboration

Yan Liang 1 collaboration

Andy Nam 1 collaboration

Michael Leon 1 collaboration

Ana Paula Camargo Martins 1 collaboration

Cleber Machado-Souza 1 collaboration

Kirsty Short 1 collaboration

John Fraser 1 collaboration

Gordon K Smyth 1 collaboration

Anna Flavia Ribeiro Dos Santos Miggiolaro 1 collaboration

Habib SadeghiRad 1 collaboration

Jarbas da Silva Motta Junior 1 collaboration

Caroline Busatta Vaz de Paula 1 collaboration

Cristina Pellegrino Baena 1 collaboration

Timothy McCulloch 1 collaboration

Gustavo Rodrigues Rossi 1 collaboration

Kirsty R Short 1 collaboration

Ken O'Byrne 1 collaboration

Christine L White 1 collaboration

Kathryn M Kinross 1 collaboration

Molly K Moore 1 collaboration

Elnaz Rasouli 1 collaboration

Robyn Strong 1 collaboration

Janelle M Jones 1 collaboration

Jason E Cain 1 collaboration

Dominik Sturm 1 collaboration

Felix Sahm 1 collaboration

David T W Jones 1 collaboration

Stefan M Pfister 1 collaboration

Colleen D'Arcy 1 collaboration

Michael L Rodriguez 1 collaboration

Jason M Dyke 1 collaboration

Reimar Junckerstorff 1 collaboration

Paul Wood 1 collaboration

Tim Hassall 1 collaboration

David S Ziegler 1 collaboration

Stewart Kellie 1 collaboration

Geoffrey McCowage 1 collaboration

Frank Alvaro 1 collaboration

Maria Kirby 1 collaboration

John A Heath 1 collaboration

Karen Tsui 1 collaboration

Andrew Dodgshun 1 collaboration

David D Eisenstat 1 collaboration

Dong-Anh Khuong-Quang 1 collaboration

Meaghan Wall 1 collaboration

Elizabeth M Algar 1 collaboration

Jordan R Hansford 1 collaboration

Agus Salim 1 collaboration

Claire Marceaux 1 collaboration

Marie A Pickering 1 collaboration

Xinyi Jin 1 collaboration

Givanna Putri 1 collaboration

Wayne D Tilley 1 collaboration

Theresa E Hickey 1 collaboration

Marie-Liesse Asselin-Labat 1 collaboration

Yi Xie 1 collaboration

Ruqian Lyu 1 collaboration

Jean Berthelet 1 collaboration

Farrah El-Saafin 1 collaboration

Antonin Serrano 1 collaboration

Michal Merdas 1 collaboration

Elgene Lim 1 collaboration

Emmanuelle Charafe-Jauffret 1 collaboration

Christophe Ginestier 1 collaboration

Matthias Ernst 1 collaboration

Frédéric Hollande 1 collaboration

Robin L Anderson 1 collaboration

Bhupinder Pal 1 collaboration

Belinda Yeo 1 collaboration

Delphine Merino 1 collaboration