Fred Choulet

Affiliations

French National Research Institute for Agriculture, Food and the Environment, INRAE, GDEC, Clermont-Ferrand, France.

Publications (15)

New insights into homoeologous copy number variations in the hexaploid wheat genome.

The plant genome

Avec: Caroline Juery , Lorenzo Concia , Romain De Oliveira , Nathan Papon , Ricardo Ramírez-González , Moussa Benhamed , Cristobal Uauy , Frédéric Choulet , Etienne Paux

Impact of ancient iron smelting wastes on current soils: Legacy contamination, environmental availability and fractionation of metals.

The Science of the total environment

Avec: Adnane Amnai , Diane Radola , Flavien Choulet , Martine Buatier , Frédéric Gimbert

Genomes of Aegilops umbellulata provide new insights into unique structural variations and genetic diversity in the U-genome for wheat improvement.

Plant biotechnology journal

Avec: Jatinder Singh , Santosh Gudi , Peter J Maughan , Zhaohui Liu , James Kolmer , Meinan Wang , Xianming Chen , Matthew N Rouse , Pauline Lasserre-Zuber , Héléne Rimbert , Sunish Sehgal , Jason D Fiedler , Frédéric Choulet , Maricelis Acevedo , Rajeev Gupta , Upinder Gill

Origin, fate and ecotoxicity of manganese from legacy metallurgical wastes.

Chemosphere

Avec: Quentin Petitjean , Flavien Choulet , Anne-Véronique Walter-Simonnet , Anne-Lise Mariet , Hervé Laurent , Patrick Rosenthal , Annette de Vaufleury , Frédéric Gimbert

Structural Variations Affecting Genes and Transposable Elements of Chromosome 3B in Wheats.

Frontiers in genetics

Avec: Romain De Oliveira , Hélène Rimbert , François Balfourier , Jonathan Kitt , Emeric Dynomant , Jan Vrána , Jaroslav Doležel , Federica Cattonaro , Etienne Paux , Frédéric Choulet

A Multidisciplinary Approach for the Assessment of Origin, Fate and Ecotoxicity of Metal(loid)s from Legacy Coal Mine Tailings.

Toxics

Avec: Honorine Gauthier-Manuel , Diane Radola , Flavien Choulet , Martine Buatier , Raphaël Vauthier , Tatiana Morvan , Walter Chavanne , Frédéric Gimbert

Location and Identification on Chromosome 3B of Bread Wheat of Genes Affecting Chiasma Number.

Plants (Basel, Switzerland)

Avec: Benoit Darrier , Isabelle Colas , Hélène Rimbert , Frédéric Choulet , Jeanne Bazile , Aurélien Sortais , Eric Jenczewski , Pierre Sourdille

A second-generation capture panel for cost-effective sequencing of genome regulatory regions in wheat and relatives.

The plant genome

Avec: Junli Zhang , Juan M Debernardi , Germán F Burguener , Frédéric Choulet , Etienne Paux , Lauren O'Connor , Jacob Enk , Jorge Dubcovsky

Deciphering carbohydrate metabolism during wheat grain development via integrated transcriptome and proteome dynamics.

Molecular biology reports

Avec: Ayesha Tahir , Jun Kang , Frederic Choulet , Catherine Ravel , Isabelle Romeuf , Fatemeh Rasouli , Asia Nosheen , Gerard Branlard

Worldwide phylogeography and history of wheat genetic diversity.

Science advances

Avec: François Balfourier , Sophie Bouchet , Sandra Robert , Romain De Oliveira , Hélène Rimbert , Jonathan Kitt , Frédéric Choulet , Auteur inconnu , Auteur inconnu , Etienne Paux

Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly.

The Plant journal : for cell and molecular biology

Avec: Tingting Zhu , Le Wang , Hélène Rimbert , Juan C Rodriguez , Karin R Deal , Romain De Oliveira , Frédéric Choulet , Gabriel Keeble-Gagnère , Josquin Tibbits , Jane Rogers , Kellye Eversole , Rudi Appels , Yong Q Gu , Martin Mascher , Jan Dvorak , Ming-Cheng Luo

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding.

GigaScience

Avec: Jean-Marc Aury , Stefan Engelen , Benjamin Istace , Cécile Monat , Pauline Lasserre-Zuber , Caroline Belser , Corinne Cruaud , Hélène Rimbert , Philippe Leroy , Sandrine Arribat , Isabelle Dufau , Arnaud Bellec , David Grimbichler , Nathan Papon , Etienne Paux , Marion Ranoux , Adriana Alberti , Patrick Wincker , Frédéric Choulet

Capturing Wheat Phenotypes at the Genome Level.

Frontiers in plant science

Avec: Babar Hussain , Bala A Akpınar , Michael Alaux , Ahmed M Algharib , Deepmala Sehgal , Zulfiqar Ali , Gudbjorg I Aradottir , Jacqueline Batley , Arnaud Bellec , Alison R Bentley , Halise B Cagirici , Luigi Cattivelli , Fred Choulet , James Cockram , Francesca Desiderio , Pierre Devaux , Munevver Dogramaci , Gabriel Dorado , Susanne Dreisigacker , David Edwards , Khaoula El-Hassouni , Kellye Eversole , Tzion Fahima , Melania Figueroa , Sergio Gálvez , Kulvinder S Gill , Liubov Govta , Alvina Gul , Goetz Hensel , Pilar Hernandez , Leonardo Abdiel Crespo-Herrera , Amir Ibrahim , Benjamin Kilian , Viktor Korzun , Tamar Krugman , Yinghui Li , Shuyu Liu , Amer F Mahmoud , Alexey Morgounov , Tugdem Muslu , Faiza Naseer , Frank Ordon , Etienne Paux , Dragan Perovic , Gadi V P Reddy , Jochen Christoph Reif , Matthew Reynolds , Rajib Roychowdhury , Jackie Rudd , Taner Z Sen , Sivakumar Sukumaran , Bahar Sogutmaz Ozdemir , Vijay Kumar Tiwari , Naimat Ullah , Turgay Unver , Selami Yazar , Rudi Appels , Hikmet Budak

All families of transposable elements were active in the recent wheat genome evolution and polyploidy had no impact on their activity.

The plant genome

Avec: Nathan Papon , Pauline Lasserre-Zuber , Hélène Rimbert , Romain De Oliveira , Etienne Paux , Frédéric Choulet

Frontiers in plant science

Avec: Jeanne Bazile , Isabelle Nadaud , Pauline Lasserre-Zuber , Jonathan Kitt , Romain De Oliveira , Frédéric Choulet , Pierre Sourdille

Réseau de co-auteurs

Frédéric Choulet 10 collaborations

Etienne Paux 7 collaborations

Romain De Oliveira 6 collaborations

Hélène Rimbert 6 collaborations

Pauline Lasserre-Zuber 4 collaborations

Nathan Papon 3 collaborations

Flavien Choulet 3 collaborations

Frédéric Gimbert 3 collaborations

Jonathan Kitt 3 collaborations

Diane Radola 2 collaborations

Martine Buatier 2 collaborations

François Balfourier 2 collaborations

Jeanne Bazile 2 collaborations

Pierre Sourdille 2 collaborations

None None 2 collaborations

Kellye Eversole 2 collaborations

Rudi Appels 2 collaborations

Arnaud Bellec 2 collaborations

Caroline Juery 1 collaboration

Lorenzo Concia 1 collaboration

Ricardo Ramírez-González 1 collaboration

Moussa Benhamed 1 collaboration

Cristobal Uauy 1 collaboration

Adnane Amnai 1 collaboration

Jatinder Singh 1 collaboration

Santosh Gudi 1 collaboration

Peter J Maughan 1 collaboration

Zhaohui Liu 1 collaboration

James Kolmer 1 collaboration

Meinan Wang 1 collaboration

Xianming Chen 1 collaboration

Matthew N Rouse 1 collaboration

Héléne Rimbert 1 collaboration

Sunish Sehgal 1 collaboration

Jason D Fiedler 1 collaboration

Maricelis Acevedo 1 collaboration

Rajeev Gupta 1 collaboration

Upinder Gill 1 collaboration

Quentin Petitjean 1 collaboration

Anne-Véronique Walter-Simonnet 1 collaboration

Anne-Lise Mariet 1 collaboration

Hervé Laurent 1 collaboration

Patrick Rosenthal 1 collaboration

Annette de Vaufleury 1 collaboration

Emeric Dynomant 1 collaboration

Jan Vrána 1 collaboration

Jaroslav Doležel 1 collaboration

Federica Cattonaro 1 collaboration

Honorine Gauthier-Manuel 1 collaboration

Raphaël Vauthier 1 collaboration

Tatiana Morvan 1 collaboration

Walter Chavanne 1 collaboration

Benoit Darrier 1 collaboration

Isabelle Colas 1 collaboration

Aurélien Sortais 1 collaboration

Eric Jenczewski 1 collaboration

Junli Zhang 1 collaboration

Juan M Debernardi 1 collaboration

Germán F Burguener 1 collaboration

Lauren O'Connor 1 collaboration

Jacob Enk 1 collaboration

Jorge Dubcovsky 1 collaboration

Ayesha Tahir 1 collaboration

Jun Kang 1 collaboration

Frederic Choulet 1 collaboration

Catherine Ravel 1 collaboration

Isabelle Romeuf 1 collaboration

Fatemeh Rasouli 1 collaboration

Asia Nosheen 1 collaboration

Gerard Branlard 1 collaboration

Sophie Bouchet 1 collaboration

Sandra Robert 1 collaboration

Tingting Zhu 1 collaboration

Le Wang 1 collaboration

Juan C Rodriguez 1 collaboration

Karin R Deal 1 collaboration

Gabriel Keeble-Gagnère 1 collaboration

Josquin Tibbits 1 collaboration

Jane Rogers 1 collaboration

Yong Q Gu 1 collaboration

Martin Mascher 1 collaboration

Jan Dvorak 1 collaboration

Ming-Cheng Luo 1 collaboration

Jean-Marc Aury 1 collaboration

Stefan Engelen 1 collaboration

Benjamin Istace 1 collaboration

Cécile Monat 1 collaboration

Caroline Belser 1 collaboration

Corinne Cruaud 1 collaboration

Philippe Leroy 1 collaboration

Sandrine Arribat 1 collaboration

Isabelle Dufau 1 collaboration

David Grimbichler 1 collaboration

Marion Ranoux 1 collaboration

Adriana Alberti 1 collaboration

Patrick Wincker 1 collaboration

Babar Hussain 1 collaboration

Bala A Akpınar 1 collaboration

Michael Alaux 1 collaboration

Ahmed M Algharib 1 collaboration

Deepmala Sehgal 1 collaboration

Zulfiqar Ali 1 collaboration

Gudbjorg I Aradottir 1 collaboration

Jacqueline Batley 1 collaboration

Alison R Bentley 1 collaboration

Halise B Cagirici 1 collaboration

Luigi Cattivelli 1 collaboration

James Cockram 1 collaboration

Francesca Desiderio 1 collaboration

Pierre Devaux 1 collaboration

Munevver Dogramaci 1 collaboration

Gabriel Dorado 1 collaboration

Susanne Dreisigacker 1 collaboration

David Edwards 1 collaboration

Khaoula El-Hassouni 1 collaboration

Tzion Fahima 1 collaboration

Melania Figueroa 1 collaboration

Sergio Gálvez 1 collaboration

Kulvinder S Gill 1 collaboration

Liubov Govta 1 collaboration

Alvina Gul 1 collaboration

Goetz Hensel 1 collaboration

Pilar Hernandez 1 collaboration

Leonardo Abdiel Crespo-Herrera 1 collaboration

Amir Ibrahim 1 collaboration

Benjamin Kilian 1 collaboration

Viktor Korzun 1 collaboration

Tamar Krugman 1 collaboration

Yinghui Li 1 collaboration

Shuyu Liu 1 collaboration

Amer F Mahmoud 1 collaboration

Alexey Morgounov 1 collaboration

Tugdem Muslu 1 collaboration

Faiza Naseer 1 collaboration

Frank Ordon 1 collaboration

Dragan Perovic 1 collaboration

Gadi V P Reddy 1 collaboration

Jochen Christoph Reif 1 collaboration

Matthew Reynolds 1 collaboration

Rajib Roychowdhury 1 collaboration

Jackie Rudd 1 collaboration

Taner Z Sen 1 collaboration

Sivakumar Sukumaran 1 collaboration

Bahar Sogutmaz Ozdemir 1 collaboration

Vijay Kumar Tiwari 1 collaboration

Naimat Ullah 1 collaboration

Turgay Unver 1 collaboration

Selami Yazar 1 collaboration

Hikmet Budak 1 collaboration

Isabelle Nadaud 1 collaboration