Kate Perofsky

Affiliations

Rady Children's Institute for Genomic Medicine, San Diego, CA, 92123, USA.
Rady Children's Hospital, San Diego, CA, 92123, USA.
Department of Pediatrics, University of California San Diego, San Diego, CA, 92093, USA.

Publications (5)

Increased Peripheral Blood Neutrophil Activation Phenotypes and Neutrophil Extracellular Trap Formation in Critically Ill Coronavirus Disease 2019 (COVID-19) Patients: A Case Series and Review of the Literature.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

Avec: Jorge A Masso-Silva , Alexander Moshensky , Michael T Y Lam , Mazen F Odish , Arjun Patel , Le Xu , Emily Hansen , Samantha Trescott , Celina Nguyen , Roy Kim , Katherine Perofsky , Samantha Perera , Lauren Ma , Josephine Pham , Mark Rolfsen , Jarod Olay , John Shin , Jennifer M Dan , Robert K Abbott , Sydney Ramirez , Thomas H Alexander , Grace Y Lin , Ana Lucia Fuentes , Ira Advani , Deepti Gunge , Victor Pretorius , Atul Malhotra , Xin Sun , Jason Duran , Mark Hepokoski , Shane Crotty , Nicole G Coufal , Angela Meier , Laura E Crotty Alexander

An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases.

Nature communications

Avec: Mallory J Owen , Sebastien Lefebvre , Christian Hansen , Chris M Kunard , David P Dimmock , Laurie D Smith , Gunter Scharer , Rebecca Mardach , Mary J Willis , Annette Feigenbaum , Anna-Kaisa Niemi , Yan Ding , Luca Van Der Kraan , Katarzyna Ellsworth , Lucia Guidugli , Bryan R Lajoie , Timothy K McPhail , Shyamal S Mehtalia , Kevin K Chau , Yong H Kwon , Zhanyang Zhu , Sergey Batalov , Shimul Chowdhury , Seema Rego , James Perry , Mark Speziale , Mark Nespeca , Meredith S Wright , Martin G Reese , Francisco M De La Vega , Joe Azure , Erwin Frise , Charlene Son Rigby , Sandy White , Charlotte A Hobbs , Sheldon Gilmer , Gail Knight , Albert Oriol , Jerica Lenberg , Shareef A Nahas , Kate Perofsky , Kyu Kim , Jeanne Carroll , Nicole G Coufal , Erica Sanford , Kristen Wigby , Jacqueline Weir , Vicki S Thomson , Louise Fraser , Seka S Lazare , Yoon H Shin , Haiying Grunenwald , Richard Lee , David Jones , Duke Tran , Andrew Gross , Patrick Daigle , Anne Case , Marisa Lue , James A Richardson , John Reynders , Thomas Defay , Kevin P Hall , Narayanan Veeraraghavan , Stephen F Kingsmore

Profiling Transcription Initiation in Peripheral Leukocytes Reveals Severity-Associated Cis-Regulatory Elements in Critical COVID-19.

bioRxiv : the preprint server for biology

Avec: Michael Tun Yin Lam , Sascha H Duttke , Mazen F Odish , Hiep D Le , Emily A Hansen , Celina T Nguyen , Samantha Trescott , Roy Kim , Shaunak Deota , Max W Chang , Arjun Patel , Mark Hepokoski , Mona Alotaibi , Mark Rolfsen , Katherine Perofsky , Anna S Warden , Jennifer Foley , Sydney I Ramirez , Jennifer M Dan , Robert K Abbott , Shane Crotty , Laura E Crotty Alexander , Atul Malhotra , Satchidananda Panda , Christopher W Benner , Nicole G Coufal

Cost Efficacy of Rapid Whole Genome Sequencing in the Pediatric Intensive Care Unit.

Frontiers in pediatrics

Avec: Erica Sanford Kobayashi , Bryce Waldman , Branden M Engorn , Katherine Perofsky , Erika Allred , Benjamin Briggs , Chelsea Gatcliffe , Nanda Ramchandar , Jeffrey J Gold , Ami Doshi , Elizabeth G Ingulli , Courtney D Thornburg , Wendy Benson , Lauge Farnaes , Shimul Chowdhury , Seema Rego , Charlotte Hobbs , Stephen F Kingsmore , David P Dimmock , Nicole G Coufal

Dynamic activity in cis-regulatory elements of leukocytes identifies transcription factor activation and stratifies COVID-19 severity in ICU patients.

Cell reports. Medicine

Avec: Michael Tun Yin Lam , Sascha H Duttke , Mazen F Odish , Hiep D Le , Emily A Hansen , Celina T Nguyen , Samantha Trescott , Roy Kim , Shaunak Deota , Max W Chang , Arjun Patel , Mark Hepokoski , Mona Alotaibi , Mark Rolfsen , Katherine Perofsky , Anna S Warden , Jennifer Foley , Sydney I Ramirez , Jennifer M Dan , Robert K Abbott , Shane Crotty , Laura E Crotty Alexander , Atul Malhotra , Satchidananda Panda , Christopher W Benner , Nicole G Coufal

Réseau de co-auteurs

Nicole G Coufal 5 collaborations

Katherine Perofsky 4 collaborations

Mazen F Odish 3 collaborations

Arjun Patel 3 collaborations

Samantha Trescott 3 collaborations

Roy Kim 3 collaborations

Mark Rolfsen 3 collaborations

Jennifer M Dan 3 collaborations

Robert K Abbott 3 collaborations

Atul Malhotra 3 collaborations

Mark Hepokoski 3 collaborations

Shane Crotty 3 collaborations

Laura E Crotty Alexander 3 collaborations

David P Dimmock 2 collaborations

Shimul Chowdhury 2 collaborations

Seema Rego 2 collaborations

Stephen F Kingsmore 2 collaborations

Michael Tun Yin Lam 2 collaborations

Sascha H Duttke 2 collaborations

Hiep D Le 2 collaborations

Emily A Hansen 2 collaborations

Celina T Nguyen 2 collaborations

Shaunak Deota 2 collaborations

Max W Chang 2 collaborations

Mona Alotaibi 2 collaborations

Anna S Warden 2 collaborations

Jennifer Foley 2 collaborations

Sydney I Ramirez 2 collaborations

Satchidananda Panda 2 collaborations

Christopher W Benner 2 collaborations

Jorge A Masso-Silva 1 collaboration

Alexander Moshensky 1 collaboration

Michael T Y Lam 1 collaboration

Le Xu 1 collaboration

Emily Hansen 1 collaboration

Celina Nguyen 1 collaboration

Samantha Perera 1 collaboration

Lauren Ma 1 collaboration

Josephine Pham 1 collaboration

Jarod Olay 1 collaboration

John Shin 1 collaboration

Sydney Ramirez 1 collaboration

Thomas H Alexander 1 collaboration

Grace Y Lin 1 collaboration

Ana Lucia Fuentes 1 collaboration

Ira Advani 1 collaboration

Deepti Gunge 1 collaboration

Victor Pretorius 1 collaboration

Xin Sun 1 collaboration

Jason Duran 1 collaboration

Angela Meier 1 collaboration

Mallory J Owen 1 collaboration

Sebastien Lefebvre 1 collaboration

Christian Hansen 1 collaboration

Chris M Kunard 1 collaboration

Laurie D Smith 1 collaboration

Gunter Scharer 1 collaboration

Rebecca Mardach 1 collaboration

Mary J Willis 1 collaboration

Annette Feigenbaum 1 collaboration

Anna-Kaisa Niemi 1 collaboration

Yan Ding 1 collaboration

Luca Van Der Kraan 1 collaboration

Katarzyna Ellsworth 1 collaboration

Lucia Guidugli 1 collaboration

Bryan R Lajoie 1 collaboration

Timothy K McPhail 1 collaboration

Shyamal S Mehtalia 1 collaboration

Kevin K Chau 1 collaboration

Yong H Kwon 1 collaboration

Zhanyang Zhu 1 collaboration

Sergey Batalov 1 collaboration

James Perry 1 collaboration

Mark Speziale 1 collaboration

Mark Nespeca 1 collaboration

Meredith S Wright 1 collaboration

Martin G Reese 1 collaboration

Francisco M De La Vega 1 collaboration

Joe Azure 1 collaboration

Erwin Frise 1 collaboration

Charlene Son Rigby 1 collaboration

Sandy White 1 collaboration

Charlotte A Hobbs 1 collaboration

Sheldon Gilmer 1 collaboration

Gail Knight 1 collaboration

Albert Oriol 1 collaboration

Jerica Lenberg 1 collaboration

Shareef A Nahas 1 collaboration

Kyu Kim 1 collaboration

Jeanne Carroll 1 collaboration

Erica Sanford 1 collaboration

Kristen Wigby 1 collaboration

Jacqueline Weir 1 collaboration

Vicki S Thomson 1 collaboration

Louise Fraser 1 collaboration

Seka S Lazare 1 collaboration

Yoon H Shin 1 collaboration

Haiying Grunenwald 1 collaboration

Richard Lee 1 collaboration

David Jones 1 collaboration

Duke Tran 1 collaboration

Andrew Gross 1 collaboration

Patrick Daigle 1 collaboration

Anne Case 1 collaboration

Marisa Lue 1 collaboration

James A Richardson 1 collaboration

John Reynders 1 collaboration

Thomas Defay 1 collaboration

Kevin P Hall 1 collaboration

Narayanan Veeraraghavan 1 collaboration

Erica Sanford Kobayashi 1 collaboration

Bryce Waldman 1 collaboration

Branden M Engorn 1 collaboration

Erika Allred 1 collaboration

Benjamin Briggs 1 collaboration

Chelsea Gatcliffe 1 collaboration

Nanda Ramchandar 1 collaboration

Jeffrey J Gold 1 collaboration

Ami Doshi 1 collaboration

Elizabeth G Ingulli 1 collaboration

Courtney D Thornburg 1 collaboration

Wendy Benson 1 collaboration

Lauge Farnaes 1 collaboration

Charlotte Hobbs 1 collaboration