Lenore Pipes

Affiliations

Department of Integrative Biology, UC Berkeley, Berkeley, CA 94707, USA.

Publications (6)

Synonymous mutations and the molecular evolution of SARS-CoV-2 origins.

Virus evolution

Avec: Hongru Wang , Lenore Pipes , Rasmus Nielsen

Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples.

Cell reports methods

Avec: Lenore Pipes , Zihao Chen , Svetlana Afanaseva , Rasmus Nielsen

Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data.

Microbial genomics

Avec: Steven G Sutcliffe , Susanne A Kraemer , Isaac Ellmen , Jennifer J Knapp , Alyssa K Overton , Delaney Nash , Jozef I Nissimov , Trevor C Charles , David Dreifuss , Ivan Topolsky , Pelin I Baykal , Lara Fuhrmann , Kim P Jablonski , Niko Beerenwinkel , Joshua I Levy , Abayomi S Olabode , Devan G Becker , Gopi Gugan , Erin Brintnell , Art F Y Poon , Renan Valieris , Rodrigo D Drummond , Alexandre Defelicibus , Emmanuel Dias-Neto , Rafael A Rosales , Israel Tojal da Silva , Aspasia Orfanou , Fotis Psomopoulos , Nikolaos Pechlivanis , Lenore Pipes , Zihao Chen , Jasmijn A Baaijens , Michael Baym , B Jesse Shapiro

AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees.

Bioinformatics (Oxford, England)

Avec: Lenore Pipes , Rasmus Nielsen

Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny.

Molecular biology and evolution

Avec: Lenore Pipes , Hongru Wang , John P Huelsenbeck , Rasmus Nielsen

A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets.

eLife

Avec: Lenore Pipes , Rasmus Nielsen

Réseau de co-auteurs

Rasmus Nielsen 5 collaborations

Hongru Wang 2 collaborations

Zihao Chen 2 collaborations

Svetlana Afanaseva 1 collaboration

Steven G Sutcliffe 1 collaboration

Susanne A Kraemer 1 collaboration

Isaac Ellmen 1 collaboration

Jennifer J Knapp 1 collaboration

Alyssa K Overton 1 collaboration

Delaney Nash 1 collaboration

Jozef I Nissimov 1 collaboration

Trevor C Charles 1 collaboration

David Dreifuss 1 collaboration

Ivan Topolsky 1 collaboration

Pelin I Baykal 1 collaboration

Lara Fuhrmann 1 collaboration

Kim P Jablonski 1 collaboration

Niko Beerenwinkel 1 collaboration

Joshua I Levy 1 collaboration

Abayomi S Olabode 1 collaboration

Devan G Becker 1 collaboration

Gopi Gugan 1 collaboration

Erin Brintnell 1 collaboration

Art F Y Poon 1 collaboration

Renan Valieris 1 collaboration

Rodrigo D Drummond 1 collaboration

Alexandre Defelicibus 1 collaboration

Emmanuel Dias-Neto 1 collaboration

Rafael A Rosales 1 collaboration

Israel Tojal da Silva 1 collaboration

Aspasia Orfanou 1 collaboration

Fotis Psomopoulos 1 collaboration

Nikolaos Pechlivanis 1 collaboration

Jasmijn A Baaijens 1 collaboration

Michael Baym 1 collaboration

B Jesse Shapiro 1 collaboration

John P Huelsenbeck 1 collaboration